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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatcttatttcataactcaagatgaaagactgtgaattgtttgttgtgttggttggtgccaatgtgctctgttgattctgctctctgatattacg...

Basic information

species Glycine max
transcript GLYMA06G13240.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13240.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 5'ss of exon 7
GTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgtt-ttcatcttatttcataactcaagatgaaagactgtgaattgtttgttgtgttggttggtgccaatgtgctctgttgattctgctctctgatattacg
|||||| || |||||||||||||||||||| |||||| | ||||||   ||||| ||||| |||||| ||||||| || ||||| || |||||||| ||| |||||   ||  ||   | |    ||  | | |    |   |  |||   || |   |  | |    ||        ||| | | | || | |
GTTTCCATTTTTTGGAAAGAAATACCAGCTGAAATTTTCCAATGATACTTCTGCCGAAACTTATTGCCTGGTTCACTTCCCAAGCTTGATCAGgttgttcttcttaaaccactacctgataactcagtgtttaatcaatagatactgtcaattagctgccttcttggttggcaccaaagctgt-taaaatcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058163|gb|CA801077.1|CA801077
EST:     GAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG                         GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
genomic: GAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
EST: gi|151398387|gb|EV268258.1|EV268258
EST:     GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG                         GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
EST: gi|151396980|gb|EV266853.1|EV266853
EST:     GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG                         -TTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAAT
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAAT
EST: gi|10234343|gb|BE803231.1|BE803231
EST:     GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAG                         GTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA
genomic: GATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGgttttcatct ... taaaactcagGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGA