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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaattgattagatgtaatccacctccatacattttaacctcaaggaatatttactaacataaatgctccttttttccctcag

Basic information

species Glycine max
transcript GLYMA06G11860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 5'ss of exon 8
ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaa-ttgattagatgtaatccacctccatacatt-ttaacc-----tcaaggaatatttactaacat---------aaatgctccttttttccctcag
|||||| || ||||||||||||||||||||  | ||||| || ||||| || ||||| ||||| ||||||||  | ||  |||| ||||| | | | ||||||     || |   ||| |   |    |  |||| || ||| |      | |     ||| |  ||   |         | |||||  | | ||   ||||
ATATGGGCTCACAGAGACTTGTGCTGGTGGAACCTTCTCGGAGTTTGAGGACACATCCGTTGGCCGTGTTGGTGCTCCACTTCCTTGCTCCTTTGTAAAGgtaacctctttacctgatttgtccacttttaatactttgttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcag

upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g02810.t01 (Vitis vinifera), 5'ss of exon 9
ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaattgattagatgtaatccacctccatacattttaacctcaaggaatatttactaacataaatgctcctttttt-----ccctcag--------------
 ||||| || ||||||| ||||||||||||  |||| || || | ||| |||||||||||||| ||||||||  | ||  |||| ||||||| ||||||||   ||| ||  |  |  || |  || | |||    |||||       ||   |  ||  ||||     || | |   |     |||| |               
GTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGg---taagtggatgaaaatattttacttgcatgtgctttaatgc--gagatcttggacctacatgtgcacttcctagctgaaaaccctgaccttggtagaaaaca

upper sequence: GLYMA06G11860.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S15_17V6.1 (Physcomitrella patens), 5'ss of exon 7
ATATGGTCTAACAGAGACTTGTGCTGGTGGGTCATTCTCTGATTTTGACGATACATCTGTTGGACGTGTTGGGCCACCTGTTCCGTGCTCATATATTAAGgtagtaattgattagatgtaatccacctccatacattttaacctcaaggaatatttactaacataaatgctccttttttccctcag-------------------
 |||||| ||||||||||||||||||||||| ||||| | || |  || |||   || ||| | ||||  ||||| ||    ||   ||  ||  | |||||| || |     | |    || ||      | | || |    || |  || ||  |     |    || || ||   |   | ||                   
CTATGGTTTAACAGAGACTTGTGCTGGTGGGACATTCACCGAATGGGATGATCGCTCCGTTCGTCGTGCGGGGCCTCCGACACCTCACTGCTACGTCAAGgtactattcccgcaaac---attcattgtttttccttcttg--tcgaacaagatggatcgtgaaccgtgttcgttaaatttgtaagggtaattggttgattgtaa