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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGAGAGGCAGCTCTTGTGGAAATTCCGCTTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTTCAGgttggcctttattatcttggaaactagtagtagatattatatatgatttcaggtatgctataggactggtacttaaatgtaagagtggtcctaagtgaaa...

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g08810.2 (Oryza sativa), 5'ss of exon 7
AGATGAGAGGCAGCTCTTGTGGAAATTCCGCTTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTTCAGgttggcctttattatcttggaaactagtagtagatattatat-atgatttcaggtatgctat-aggactggtacttaaatgtaagagtggtcctaagtgaaa---
 ||||||| ||||||  | |||||||| || ||||||||||||||||| ||||  ||||||||||||||  | |||   || || ||||| ||| | || ||| |     |  |||     | ||  | |  | | ||  ||  |  |  ||  | |  ||| ||||   ||      |    ||  ||  |||  |        
GGATGAGAAGCAGCTGGTCTGGAAATTTCGGTTCTCTTTGATGTCTGAGAAGAAAGCTCTTACAAAGTTTGTTCGTGCAGTGGACTGGAGCGATATCCAAgttagtaaa-agcatccacacatcttattgccgtttttgcattgtattgccatattttttattaggatcagtg----gactggaggatgtccctttgcatgcctg

upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 7
AGATGAGAGGCAGCTCTTGTGGAAATTCCGCTTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTTCAGgttggcctttattatcttggaaactagtagtagatattatatatgatttcaggtatgc-tataggactggtacttaaatgtaagagtggtcctaagtgaaa
|||||| || || ||  | ||||| || || |||||| | |||||||||||||| ||||| |||||||| || |||||||| || |||||||||||||||||  |  |  |   | |     ||| |||| |  |||| |  ||| ||     ||| | | | | |   |          |   ||               
AGATGAAAGACAACTTCTTTGGAAGTTTCGTTTCTCTCTAATGTCTGAAAAGAGAGCTCTAACAAAGTTTCTTCGTTGTGTGGAGTGGAGTGATGTTCAGgtaagtgtacaactttt-----acttgtag-atctatttt-catggttcttattattcatgttgcataagcttcccgtgttggcag---------------

upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 7
AGATGAGAGGCAGCTCTTGTGGAAATTCCGCTTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTTCAGgttggcctttattatcttggaaactagtagtagatattatatatgatttcaggtatgctataggactggta---cttaaatgtaagagtggtcc-taagtgaaa
|||||||| |||||| |||||||||||||| ||||| ||||||||||| ||||||||||| || ||||| || || |||||||||||||||||| |||||||| ||   | || ||||    | ||    |  ||| |  ||||      ||  |||       ||||  |   |||  ||     |||  |   ||| |||| 
AGATGAGAAGCAGCTTTTGTGGAAATTCCGTTTCTCATTGATGTCTGAGAAGAGGGCTCTCACGAAGTTTCTCCGATGTGTTGAATGGAGTGATCTTCAGgttagcacatcttctcttctgcaata----tgcatactgcatattgagcaagacatgactacaaactgtaaaatcttggattatccagtaatttgtaaatgaat

upper sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S58_188V6.1 (Physcomitrella patens), 5'ss of exon 7
AGATGAGAGGCAGCTCTTGTGGAAATTCCGCTTCTCTTTGATGTCTGAAAAGAGGGCTCTTACAAAGTTCCTGCGTTGTGTTGAATGGAGTGATGTTCAGgttggcctttattatcttggaaa-----ctagtagtagatattatatatga--tttcaggta-tgctataggactggtacttaaatgta---agagtggtcctaagtgaaa--------------------------------------------------
|||||| || |||||  | |||| |||| | || |  |||||||| |||||||||||||| || |||||  | || |||||||| ||||||||||  |||||  | ||  | | | | | | |      |    || |  | || | |     ||| || || ||    |  |    |||  || | ||   |  | | ||| ||     |                                                  
AGATGAAAGACAGCTTCTCTGGAGATTCAGGTTTTACTTGATGTCCGAAAAGAGGGCTCTCACCAAGTTTTTACGATGTGTTGATTGGAGTGATGCACAGgtcagtctccaatttttagaagagacatttgagggttgtgaataaagacaggtttttagataatgactcaacagacttaccaaattctagttaacgcgttccaaaaaattaagtaaataaatacatgaaacctaaaacgtcgtgctatttgcgtggtccag