1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagcccccttttgcttgcaactaacttcttgcttctcaccattgtgaaatttgtgtgtgtgcattaaaattacaaatccgtccacttgaaatctcttg...
species | Glycine max |
transcript | GLYMA06G08670.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|17022063|gb|BM093097.1|BM093097
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|16996361|gb|BM085733.1|BM085733
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAAEST: gi|24135997|gb|BU926507.1|BU926507
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAA
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|19346696|gb|BM891576.1|BM891576
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|7686676|gb|AW757333.1|AW757333
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTAGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|254323227|gb|GR840032.1|GR840032
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG GGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTEST: gi|151411675|gb|EV281486.1|EV281486
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
EST: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAG G-TTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
genomic: AGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagccccc ... tgttctaaagGGTTTTGCTAGTGGAAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACCCCACTGGTGTGGATCCAACCCTTGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATCAAAAGCTTTGTTACCTTTCTTTGACAGTGCTTATCAGgtaagcccccttttgcttgcaactaacttcttgcttctcaccattgtgaaatttgtgtgtgtgcattaaaattacaaatccgtccacttgaaatctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccctt