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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttagtaattaatggtgctcaaagcttctttttaagaaaacatatataccaataatcctttggctgaagataaaccata...

Basic information

species Glycine max
transcript GLYMA06G08620.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 6
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttag---taattaatggtgctcaaagcttctt--tttaagaaaacatatataccaataatcctttggctgaagataaaccata
|||||||| ||||| || ||||| || ||||| ||||||||||||||||||||| | | | ||  | ||    | |    ||  |  |   ||  ||| ||| ||  |||     | ||| | | ||| |||  |  |  || |   || | ||  
GGAATTGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatgggctgtttgtactgaactgaaacttatattttctggcagaaatcttattactttttttcaccat-tcttccattaaagccattacttag--tagagca--

upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 7
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttagtaattaatggtgctcaaagcttctttttaagaaaacatatataccaataatcctttggctgaagataaaccata--
||||| || ||||| || ||||| || ||||| ||||||||||||||||||||| |  || ||  |  |    | |  || | ||  |       | | ||| | ||   | | | |||      |  | |     | |  |  |        
GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatggattgtttgtattgaactga--aacttatattttctggtggtacttgtcaaagcaccttttattatttcagccatcaaaatcattactagttgagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185323|gb|HO030536.1|HO030536
EST:     TCTTTCAAGACTGGTGCTACTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: TCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
EST: gi|254349304|gb|GR860102.1|GR860102
EST:     TGCTATTCTCTTGG                         GCTGGTCTATTTGTGTATGACATTTTCTGGG-TTTCTTCACTCCAGTGAT
genomic: TGCTATTCTCTT-Ggtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGAT
EST: gi|6072670|gb|AW102057.1|AW102057
EST:     AATTGAAATGCTTTCTTCTTGG-TCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCCTATTT-TGTATGACATT
genomic: AATTGAAATGCTTTCT-CTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTC-TATTTGTGTATGACATT
EST: gi|58024459|gb|CX711200.1|CX711200
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
EST: gi|254349303|gb|GR860101.1|GR860101
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
EST: gi|5342731|gb|AI795015.1|AI795015
EST:     GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG
genomic: GAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACTCCAGTGATG