Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttagtaattaatggtgctcaaagcttctttttaagaaaacatatataccaataatcctttggctgaagataaaccata...

Basic information

species Glycine max
transcript GLYMA06G08620.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 6
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttag---taattaatggtgctcaaagcttctt--tttaagaaaacatatataccaataatcctttggctgaagataaaccata
|||||||| ||||| || ||||| || ||||| ||||||||||||||||||||| | | | ||  | ||    | |    ||  |  |   ||  ||| ||| ||  |||     | ||| | | ||| |||  |  |  || |   || | ||  
GGAATTGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatgggctgtttgtactgaactgaaacttatattttctggcagaaatcttattactttttttcaccat-tcttccattaaagccattacttag--tagagca--

upper sequence: GLYMA06G08620.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 7
GGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgtttttctttctatctttagtaattaatggtgctcaaagcttctttttaagaaaacatatataccaataatcctttggctgaagataaaccata--
||||| || ||||| || ||||| || ||||| ||||||||||||||||||||| |  || ||  |  |    | |  || | ||  |       | | ||| | ||   | | | |||      |  | |     | |  |  |        
GGAATCGAGATGCTATCACTTGGATCATTCAAAACTGGTGCTATTCTCTTGgtatggattgtttgtattgaactga--aacttatattttctggtggtacttgtcaaagcaccttttattatttcagccatcaaaatcattactagttgagca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6072670|gb|AW102057.1|AW102057
EST:     AATTGAAATGCTTTCTTCTTGG-TCTTTCAAGACTGGTGCTATTCTCTTG                         GCTGGTCCTATTT-TGTATGACATT
genomic: AATTGAAATGCTTTCT-CTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGgtaggtgttt ... tattttacagGCTGGTC-TATTTGTGTATGACATT