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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatcttgaccagtgatttgtgtttgtttctttattttccacaaagtgagaatcatagtatatcttataagggagggggacaacggattgagaaa...

Basic information

species Glycine max
transcript GLYMA06G08260.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293857|gb|FG986066.1|FG986066
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|207730657|gb|GD706956.1|GD706956
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGAACCAGGAATTTCTACCCT
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGA-CCAGGAATTTCTACCCT
EST: gi|254326872|gb|GR836481.1|GR836481
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|151403047|gb|EV272860.1|EV272860
EST:     GGCTATTGCTCGTGATGGTGCAAGTGGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGGGTGACCAGGAATTTCTACCCTGGCGAC-AACTTCCA
genomic: GGCTATTGCTCGTGATGGTGCAAGTGG-TGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|120529083|gb|EH257217.1|EH257217
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAG
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAG
EST: gi|151400109|gb|EV269923.1|EV269923
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGG-AGTGACCAGGA-TTTCTACCCTGGCGAC-A-CTTC-A
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|33389738|gb|CA852945.1|CA852945
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|151393354|gb|EV263229.1|EV263229
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCAGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|151405592|gb|EV275406.1|EV275406
EST:     GGCTATTGCTCGTGATGGTGCAAGTGGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: GGCTATTGCTCGTGATGGTGCAAGTGG-TGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|31463156|gb|CD405184.1|CD405184
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCGACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|7030215|gb|AW459998.1|AW459998
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|5605707|gb|AI899868.1|AI899868
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGNTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|192333616|gb|FK025433.1|FK025433
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|254321190|gb|GR827639.1|GR827639
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|208146331|gb|GD946210.1|GD946210
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGG
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGG
EST: gi|254321189|gb|GR827638.1|GR827638
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|192330044|gb|FK020860.1|FK020860
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|31456680|gb|CD398708.1|CD398708
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|21600722|gb|BQ611053.1|BQ611053
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGTGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|193327659|gb|FK297362.1|FK297362
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|58017005|gb|CX703747.1|CX703747
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACT--GAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|120494878|gb|EH223045.1|EH223045
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|24205242|gb|BU964495.1|BU964495
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|192332116|gb|FK026368.1|FK026368
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTTTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|16106059|gb|BI893799.1|BI893799
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|22525058|gb|BU083869.1|BU083869
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|254326873|gb|GR836482.1|GR836482
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|57575063|gb|CX548038.1|CX548038
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACT--GAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|14516464|gb|BI095136.1|BI095136
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|31457184|gb|CD399212.1|CD399212
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|9899223|gb|BE608121.1|BE608121
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCTTA                         ATAAACTCATAGGGAGTGACCAACAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|5688240|gb|AI941255.1|AI941255
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|193448216|gb|FK416399.1|FK416399
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGA
EST: gi|192330043|gb|FK020859.1|FK020859
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|192310605|gb|FG999250.1|FG999250
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|13480102|gb|BG509435.1|BG509435
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|19053309|gb|BM731976.1|BM731976
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
EST: gi|17519481|gb|BM188523.1|BM188523
EST:     TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATA                         ATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA
genomic: TGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatc ... ccttgtgtagATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTAGTAAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGTGCAAGTGGTGGGGTGGTGCGAACAGTCATAgtaagacatcttgaccagtgatttgtgtttgtttctttattttccacaaagtgagaatcatagtatatcttataagggagggggacaacggattgagaaa

- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggggg