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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGgtgtgtatatgcatgtgaaagcaccttaattaacatttaggatttgagttgtcaaataaaatcttttttgtccttccctttcctcttccccttcaaataataataataatgctatatgcacttgctgacag

Basic information

species Glycine max
transcript GLYMA06G06360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g51540.1 (Oryza sativa), 5'ss of exon 7
ATGCAGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGgtgtgtatatgcatgtgaaagcaccttaattaacatttaggatt-tgagttgtcaaataaaatcttttttgtccttccctttcctcttccccttcaaataataataataatgctatatgcacttgctgacag
 | |||||||  ||||||| ||||  |||||||||||| | |||||||||||||| |||||| || | ||| | || |||      | |||    | ||    |||   ||| |        ||      |||| | |  | |  | ||    |||| | | |  |     |  ||   ||           | || |   |   |||  |  | |      || | |    
GTCCAGGACCACATGAGATCCAGTATGATGAAGAATGGCTTGCAATAACACGGAAATTCAACAATGTTTTCTCCTTAACTCG----GATGCCATTTACAATGCTgtcagtgctta-------actgcgtataacgtctttgctcgttagcatgcaaacagagttctgaaaatattttttttaaaaaaataaatccagagtttttcaattgtcttgt-----tttacag----

upper sequence: GLYMA06G06360.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g08180.t01 (Vitis vinifera), 5'ss of exon 7
ATGC-AGGACCTTATGAGATTCAGTGCGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCATATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGgtgtgtatatgcatgtgaaagcaccttaattaacatttaggatttgagttgtcaaataaaatcttttttgtccttccctttcctcttccccttcaaataataataataatgctatatgcacttgctgacag
 ||| ||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||  ||| || ||||| ||   | |  ||||| | ||  ||| ||| ||| | | |  |    | ||| || | |||    |||  | |  |||||| | || ||  ||||  | |  |||    ||       | |||    |  |||   | |||||  | |     ||
-TGCCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTGGCAATAACACGGAAGTTCAACTCTATCTTTCCTTTAACCATCCATCGTGCAAATTTGGGgtctgtgtat-cttctctatatgcattatttcagatt----att--attactcaaatcacattttcattgtggtcctgttt----ttatataagagatagcc-tgttaac-ttttatgctttggaatgtag