Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgcactgatgttcatttcttctcattgatgactaaaatgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaagataaaccaaa...
Basic information
species | Glycine max |
transcript | GLYMA06G06310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgc--actgatgtt--catttcttctcattgatgactaaaatgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaagataaaccaaa
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GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttcggtgcaattggtctgtctgtctgtcact-ccacctgatgtaat-gtattttacag------------------
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G829894_T03 (Zea mays), 5'ss of exon 2
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgc--actgatgttcatttcttctcattgatgactaaaatgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaagataaaccaaa
|| || | |||||||||||||| || || || || || ||||| || || |||||||||||||| |||||||| | || ||| || | | | | | | | ||| || | ||| | || | || | | ||
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGTGATGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatatt-gctaaatatattcattcagtgcaattggtctgtctgtcactcttacctgacgttatgtatttttccag------------------
upper sequence: GLYMA06G06310.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgca----ctgatgttcatttctt----ctcattgatg-actaaa--atgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaag-ataaaccaaa
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GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattca-cacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14260019|gb|BG882927.1|BG882927EST: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAG GAAGCTGTTGCTATGATTAAATCAATTGAGGATGCTGAGGAGGCAGCAA
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgcactgat ... ctttcttcagGAAGCTGTTGCTATGATTAAATCAATTGAGGATGCTGAGGAGGCAGCAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAAAAAATTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCACAAATGAGgtgcactgatgttcatttcttctcattgatgactaaaatgcatcctcatctcatagtcactaaaagtaagaggaaaatggagcaaaaaagataaaccaaa
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaaaa