Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCTTCTGAGAAAACTAGCTTGTGTCAACATCGAGAACCTCAACCACCAGGAGAAGCTTGCCTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaattatgtccgttagattaacatgtaatgtcatctgaaatggccttgttaacagaaccattctttgagccaagcacaattttaaagtagtaatagctaagttctgctctgcttcag
Basic information
species | Glycine max |
transcript | GLYMA06G04060.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G04060.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g28850.2 (Oryza sativa), 5'ss of exon 5
GCTTCTTCTGAGAAAACTAGCTTGTGTCAACATCGAGAACCTCAACCACCAGGAGAAGCTTGCCTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaattatgtccgttagattaacatgtaatgtcatctgaaatggccttgtt-aacagaaccattctttgagccaagcacaattttaaagtagtaatagctaagttctgctctgcttcag
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GGCTTTGATCCGGAGGCTTTCATCGGTTGACCTGACGGGGCTCTCCCATCAGCAGAAGCTGGCATTCTGGATCAACATCTACAATTCGTGCATGATGAATgtaagctg--tcagcctgtca--ctcataattgagcccacccatcctgaatttcttcatcttgatcaattat--atctttgttcattttc----tcgttagagggaaatt--------------
upper sequence: GLYMA06G04060.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G066516_T01 (Zea mays), 5'ss of exon 5
GCTTCTTCTGAGAAAACTAGCTTGTGTCAACATCGAGAACCTCAACCACCAGGAGAAGCTTGCCTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaattatgtccgttagattaacatgtaatgtcatctgaaatggccttgttaacagaaccattctttgagccaagcacaattttaaagtagtaatagctaagttctgctctgcttcag
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GGCCTTGCTGCGGAGGCTGTCGTCGGTTGACCTGGCGGGGCTCTCCCATCAGCAGAAGCTGGCCTTCTGGATCAACGTCTACAATTCCTGCATGATGAACgtaagcca--tcgggcagtcacatttcagagttgggtgtttcc---tcttcttgt-----gtgtttttttttaaaagaagaagacagcaaaattcgcaat---tcggtt-tgct---------
upper sequence: GLYMA06G04060.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0001g11120.t01 (Vitis vinifera), 5'ss of exon 8
GCTTCTTCTGAGAAAACTAGCTTGTGTCAACATCGAGAACCTCAACCACCAGGAGAAGCTTGCCTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaattatgtccgttagattaacatgtaatgtcatctgaaatggccttgttaacagaaccattctttgagccaagcacaattttaaagtagtaatagctaagttctgctctgcttcag
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GCGCCTCCTCGGGAAACTTGCCTCTGTTAACTTACAGGGCCTAACCCATCAGGAGAAGCTTGCTTTCTGGATCAACACCTATAATTCCTGCATGATGAATgtaagcaaggcctttttgtaaacgtaaatttaaactctatgtttattcttttgcttatctg---tttactgtactgcattgcttgctttag--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254318137|gb|GR832305.1|GR832305EST: CTTCTGGATCAACATCTACAATTCATGTATGATGAAT GCGTACCTAGAAAAGGGTATACCAGAGAGTCCTGAAATGGTTGTTGCGCTG
genomic: CTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaat ... tctgcttcagGCGTACCTAGAAAAGGGTATACCAGAGAGTCCTGAAATGGTTGTTGCGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCTTCTGAGAAAACTAGCTTGTGTCAACATCGAGAACCTCAACCACCAGGAGAAGCTTGCCTTCTGGATCAACATCTACAATTCATGTATGATGAATgtaagtcaattatgtccgttagattaacatgtaatgtcatctgaaatggccttgttaacagaaccattctttgagccaagcacaattttaaagtagtaatagctaagttctgctctgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC