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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGATCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcctttcttgtgtactttattcgtggaatgatatttattttcttaatctgtatcgtccatcatatatgtag

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 7
GAACGATCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACAAGGGGAACTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcctttcttgtgtactttattcgtggaatgatatttattttcttaatctgtatcgtccatcatatatgtag--
||| |||||  |||| ||||||||||| || |||||||| || || |||| |||||||||||| || || || ||||| ||||||||||| || || ||||||  | || |||  || | || |  |  ||| |       | ||| | ||         | | ||  | || |||    
GAATGATCGCTTAGCTGTTAGCAAGCTAGTCACCAGCTTAACTAGAGGAAATGTTCGCTCACCATTGGCTCAATGCCTCTTGATCCGTTATACCAGCCAGgtgcatatctttttctg-gaacatagtctgtgcagcatgggtgattattttgtgtcaccacattcaataaatgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193539967|gb|FK496977.1|FK496977
EST:     CTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACAAGTCAG                         GTTATTCATGAATCAGGCAATACACAGTCAGGGGAACGCCCCTTCTATGAT
genomic: CTGTTCGCTCACCTTTAGCACAGTGCCTTTTGATCCGTTACACAAGTCAGgtgtgtttcc ... atatatgtagGTTATTCATGAATCAGGCAATACACAGTCAGGGGAACGCCCCTTCTATGAT