Sequence
atgc intronic sequence ATGC exonic sequenceGTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatag
Basic information
species | Glycine max |
transcript | GLYMA06G01120.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G34660.2 (Arabidopsis thaliana), 5'ss of exon 7
GTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatg-ttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatag
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GTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATCAGCTCGAAGGAGAGgttgg----tgtgcattagttttacagctttcagt------ttcctgtgataat--agtattcttgtcgaacaatcagttcatcattatatgagtcaactaaggacaaaatggaacattcttgaacctacag---
upper sequence: GLYMA06G01120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G34660.3 (Arabidopsis thaliana), 5'ss of exon 7
GTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatg-ttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatag
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GTTGAATCTGAACGCGCCTACCATCAAAGAGTCCTCCAAATACTTGATCAGCTCGAAGGAGAGgttgg----tgtgcattagttttacagctttcagt------ttcctgtgataat--agtattcttgtcgaacaatcagttcatcattatatgagtcaactaaggacaaaatg-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208225926|gb|GE021081.1|GE021081EST: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAG ATGAATATCAGAACGA
genomic: GTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccatt ... ttaataatagATGA-TATCAGAACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGAAGCAGAGCGTGCCTATCATCAAAGAGTACTCCAAATACTTGATCAGCTTGAGGGAGAGgtgagccattgtatccctttgtgtcatttttcattatattctccgtatagaagtcaagtatgctattagaatgttacgtcttttttttttgtatcaacaaatgattatatgacacatgtatattttaataatag
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