Sequence
atgc intronic sequence ATGC exonic sequenceGTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttcaattgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatag
Basic information
species | Glycine max |
transcript | GLYMA06G00600.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G049141_T02 (Zea mays), 5'ss of exon 7
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttca-attgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatag----------------------------------
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GACCAATACGGCACAGGTGCTTATCTGTCATTGGGAAATTAATGTACTATAGCTCAGCTGAGATGATCCAGTCTCTCCTTAGCACAACAAACATTTCCAGgtgcttaacacaatatatttcatcga-gttatctcatgttattagaaactatcttat-cacatgaattccaaatatttgtttcaagctattaacttctatatcaaccattgcag
upper sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 7
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 5'ss of exon 7
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttcaattgggttgctgttg-ctctatgttctctgtagaaaacttatgcattgtcactttgatgatatag
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GTACGATTCGCCATAAATGTCTCTCAGTCATTGGAAAGTTGATGTATTTCAGCAGTTCAGAAATGATTCAATCTCTAATTGGTGACACAAATATTTCGAGgtatgctgtttacgatataaattaagtttgacacgacagtgtgtgca---acttcttacattttt-ttcttcttatgtag
upper sequence: GLYMA06G00600.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 5'ss of exon 7
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttcaattgggt---tgctgttgctctatgttctc----------------tgtagaaaa--cttatgcattgtcactttgatgatatag
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GCCCTGTTCGCCATAAATGTTTGTCAGTTATTGGAAAATTAATGTACTTCAGCACCGCAGATATGATCCAGTCTTTGATTAGTGTGACAAACATATCAAGgtactt-gcatttcaaatatatatatacatatattttttatttcaaaggtagttactagaatgctggaaatgcttatgcattgttattacttgattctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209718733|gb|BW671934.1|BW671934EST: AGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAG TTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGC
genomic: AGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaa ... gatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCAGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGgtatttagaacttcaattgggttgctgttgctctatgttctctgtagaaaacttatgcattgtcactttgatgatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG