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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAGgtacatctagatccagtgacgttaggaccaccatgttttagaaggaaaagtagtctttctgagcgttcgttcaattatcgtttgtagtccctcttatttgacgtaaagtcaacacaatcctacag

Basic information

species Glycine max
transcript GLYMA05G38140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G38140.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g01200.t01 (Vitis vinifera), 5'ss of exon 8
TTCAAAGGATATCTTGATGCGGGTAATAGCACAGAGTCTTCCTCCATCGTCAACTCTTGTTGAGAAGgtacatct----------------------agatccagtgacgttaggaccaccatgttt--tagaaggaaaagta---gtctttctgagcgttcgttcaattatcgtttgtagtccctcttatttgacgtaaagtcaacacaatcctacag------------------------------
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TTCAAAGGATATCCTGATGCGGGTCATAGCACAAAATCTTCATCCAGAATCCACTCCAGTGGAGAAGgtatttgtctccagcctttctgtcaaaataaaatccaatt-cgttgtgtccttaaactttgctagaaatgattataaatgtgtcgcctattgtctgtg-aattcttcatgataaactctcttatgaacaaaaaggataatgacatttaactctgaatataactttttttatttcatgttcag