1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacgctaccatttccttttaaattgtttttattagggaatttgttcagtgctgtgtgatgtagtcagtgttatctttatgacag
species | Glycine max |
transcript | GLYMA05G37850.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCG ATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATEST: gi|120496239|gb|EH224406.1|EH224406
genomic: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacg ... tttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAAT
EST: CTGAAGCTGACATGATCCAGAAATTTCGTGCAGGCCTTGCTTTGCAGGCG ATAGCAACGGCTCTTTTTGCCAATTCACCCTTTAAAGAGGGAAAGGCAAATEST: gi|120493888|gb|EH222055.1|EH222055
genomic: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacg ... tttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAAT
EST: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCG ATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAATEST: gi|9204205|gb|BE330429.1|BE330429
genomic: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacg ... tttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAAT
EST: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCG ATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAAT
genomic: CTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacg ... tttatgacagATAGCAACGGCTCTTTTTGCAAATTCACCCTTTAAAGAGGGAAAGCCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAATCTGGACTTTAGTTCTGAAGCTGACATGATCAAGAAATTTCGTGCAGGCCTTGCTTTGCAGCCGgtaagaaacgctaccatttccttttaaattgtttttattagggaatttgttcagtgctgtgtgatgtagtcagtgttatctttatgacag
- - - - - - - - - CTGAAG
- - - - - - - - - - TGAAGC
- - - - - - - - - - - AAGCTG
- - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - AAGAAA