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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaataaacatgcccttcaattgtataaattctcattgctactactgaagaataatctggtgcagccatctaattagatgtcgaagacaacctttc...

Basic information

species Glycine max
transcript GLYMA05G37810.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G11440.1 (Arabidopsis thaliana), 5'ss of exon 7
TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaataaacatgcccttcaattgtataaattctcattgctacta-ctgaagaataatctgg-tgcagccatctaattagatgtcgaagacaacctttc
 |    ||||||||| |||| |||||| | |||||||| ||||||||||| ||||||||  | || || |||||||| || ||||| |||      |  |      ||     | ||   |  | |  |  | || |   ||    ||| |||||                               
CTTACCTGTGGAGGACTAGCGGGATCTGCTGCTGCTTTCTTCACAACCCCATTTGATGTAGTAAAAACAAGATTACAAACTCAGgtttgttt----ctcgtttaggaaccacgttaacaattgtcgtcaacatctaacttatcccatggctgcag-------------------------------

upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g03490.t01 (Vitis vinifera), 5'ss of exon 6
TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaataaacatgcc-cttcaattgtataa----attctcattgctactactgaagaataatctggtgcagccatctaattagatgtcgaagacaacctttc
 |||  ||||||||| | ||||| ||||| |||||||| || || || |||||||||||| | ||||| ||||||||||||||||| ||||||    | ||   ||| ||||    |    |||  |||||    ||    | | |||||  ||   ||  | ||   | || || |  |  |  |   
CTAGCTTGTGGAGGACTCGCTGGGTCTACTGCTGCTTTTTTTACTACTCCTTTTGATGTGGTGAAGACAAGATTACAGACACAGgtttgtaatttgtaagctgtttccattgagctactgcatttgcattggacttagcccaaagtaatcaagttgtgctgt-tagagacat-tcaatcatcaatt---

upper sequence: GLYMA05G37810.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ26054 (Selaginella moellendorffii), 5'ss of exon 6
----------------TTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaataaacatgcccttcaattgtataaattctcattgctactactgaagaataatctggtgcagccatctaattagatgtcgaagacaacctttc
                 | | |||||||||| | || ||||| ||||| || ||||| || || |||||||| ||| | ||||| ||||| ||||||||||||| |   |        || |||  || |   | ||    | ||     |  || |  | |  | |||                               
ATGGAAAAATCTTCAGCTCGCGTGTGGAGGACTTGCAGGATCGACGGCAGCCTTATTTACCACACCTTTTGACGTGGTGAAGACAAGATTGCAGACACAGgtatctttga--------ctgcaaa-gtttctttccttcacgttaacttgggcgatttctttcttccag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16345824|gb|BI971419.1|BI971419
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
EST: gi|58017466|gb|CX704208.1|CX704208
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCTCTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
EST: gi|8284513|gb|BE022072.1|BE022072
EST:     CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA
genomic: CTTTATTCACAACCCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatgtaata ... tgcgccgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCACTTTACAAA