Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacctgctttgatgatgcagtgtcctctctcaatattgctcaatttaatgtttgtaattcattggtattttatttggtaattgaacag

Basic information

species Glycine max
transcript GLYMA05G36620.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36620.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g02140.t01 (Vitis vinifera), 5'ss of exon 7
GTTTTCGAAGGCGAGAGGAGTCTCACAAAGGATTGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacctgctttgatgatgcagtgtcctctctcaatattgctcaatttaatgtttgtaattcat-tggtattttatttggta-attgaacag
||||| ||||| || ||||||||||||||||| ||||| |  || ||||||||||||||   |||||| |||||||| ||||||||||  |       ||   |  |    || ||| | ||   | |||    |   |   | |||| || || || | |  ||  ||  ||||||||
GTTTTTGAAGGTGAAAGGAGTCTCACAAAGGACTGCCGACAGCTCGGGAAATTTGATCTTAATGGAATCCCTCCAGCTCCAAGgtttgcga---aacctgtccactccaactcttctgtaaaa--tactcctactgtaggcagaaattgatgtgataatctgattcctatgttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192314531|gb|FK006345.1|FK006345
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254344498|gb|GR851195.1|GR851195
EST:     GGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: GGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254333979|gb|GR848897.1|GR848897
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|26058351|gb|CA801265.1|CA801265
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGA
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGA
EST: gi|192314502|gb|FK006344.1|FK006344
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|7145970|gb|AW507892.1|AW507892
EST:     TCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254333980|gb|GR848898.1|GR848898
EST:     CCTTC-TGGGAAATTTGATCTGTCTGGAATTCCTCCCACCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: CCTTCTTGGGAAATTTGATCTGTCTGGAATTCCT-CCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|298196006|gb|HO044397.1|HO044397
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|254330970|gb|GR842235.1|GR842235
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|298172742|gb|HO019782.1|HO019782
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTAGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
EST: gi|298169283|gb|HO020643.1|HO020643
EST:     TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAG                         GGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT
genomic: TGCCGCCTTCTTGGGAAATTTGATCTGTCTGGAATTCCTCCAGCCCCAAGgtttgttacc ... aattgaacagGGGTACGCCTCAAATTGAAGTGACCTTCGAAGTTGATGCCAACGGCATTCT