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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACGTGTACTCGTTTGGGATAGTATTACTGGAGCTTGTCACAGGACGGAAAGCAGTAGATATAAATCGGCCCAAGGGCCAGCAATGCCTAAGTGAATGGgtaagatttcatctgaaaatgtttactacatattatagttttcaatttttcttatgatgtttcaagacaaacacttaaaattattgcttgtggttcaaatgtctgcatag

Basic information

species Glycine max
transcript GLYMA05G36280.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36280.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g02430.t01 (Vitis vinifera), 5'ss of exon 7
TGACGTGTACTCGTTTGGGATAGTATTACTGGAGCTTGTCACAGGACGGAAAGCAGTAGATATAAATCGGCCCAAGGGCCAGCAATGCCTAAGTGAATGGgtaagatttcatctgaaaatgtttactacatattatagttttcaatttttcttatgatgtttcaagacaaacacttaaaattattgcttgtggttcaaatgtctgcatag
||| || ||||| |||||  |||| ||  |||||||  | ||||||||||||||  | |||||||| ||||| ||||| ||||| ||||| | |||||||||| || ||   |       ||||||||  | |  ||    | |  |   | |||   | |   ||   |    |  | ||    |       | | | ||         
TGATGTATACTCCTTTGGAGTAGTGTTGGTGGAGCTCATTACAGGACGGAAAGCTATGGATATAAACCGGCCAAAGGGTCAGCAGTGCCTCACTGAATGGgtatgagttagacaactttagtttactaggtgtggtaaagct-atataggcctatagggatgagagttcatgcttctagatag--gaaaaacatcctattgct-------