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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGgttcttcctctcactcatcaaatttcctgtatggttttcaacatctttgaataagtaatgtgtaaccttgcttctgtctttaaatgtag

Basic information

species Glycine max
transcript GLYMA05G35210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35210.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G49040.1 (Arabidopsis thaliana), 5'ss of exon 24
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGgtt----cttcctctcactcatcaaatttcctgtatggttttcaacatctttgaataagtaatgtgtaaccttgcttctgtctttaaatgtag-----------------------------------
||||| || |||||||| ||||| ||||||||||||||  | |||||||| ||||| |||||| |||     ||   ||| | ||| |    |  || |  ||  ||     | |||   | | |  |   ||    || |  | |||||||  |                                      
GTTAAAATTTGGGATCCAAGTCTGCGTGGTTCTGAACTTCGAGCAACTTTGAAAGGACATACTGGgtatacactatttcttattcaccttgatggctctcgggagttatgtttttttttgttaatttttcata--tgtggtggtttctttaacagcgcttcctttcttgttttcttttcaacttttgatgtag

upper sequence: GLYMA05G35210.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 24
GTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAACTCAGGGCAACTTTAAAAGGGCATACTAGgttcttcctctcactcatcaaatttcctgtatggttttcaacatctttgaataagtaatgtgtaaccttgcttctgtctttaaatgtag-----------------------------------------------------------------------
|| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | ||  || ||| |||    || |||   |   |  |  | |     |||    || |  | | |  |||| | | | |||||   | | |                                                                       
GTGAAGATCTGGGATCCTACTCTTCGTGGTTCTGAACTTAGGGCAACTTTGAAAGGACATACAAAgtatttactc-cacaacccatattctttaatttttgctgattccttttttccaactggtttttttcctttcctttctctttttttttggctactatgatttaagtatttgtctttacattaaattactgattttcctttcgcttttggatctctacatag