Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgacatttattaagtttagtttgataaagctatgatatttacctaccaatgagtttctcttgtaaaagtgcaattctgtcactcaaatatgttt...

Basic information

species Glycine max
transcript GLYMA05G34630.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g48770.2 (Oryza sativa), 5'ss of exon 3
ACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgacatttattaagtttagtttgataaagctatgatatttacctaccaatgagtttctcttgtaaaagtgcaattctgtcactcaaatatgttt
||| ||||   || ||||||   || ||||| ||||| |||||||| ||||| ||||| |||||||  ||||||||||| || || ||||| || || |||||||   |   | |  | | |   ||   |||| | ||    |||       ||    |   |||  | | | |||  | || |      | |      
ACACTGTCCGTGTAAAAAATACAACCCTTCCCAAGGGTACATATGTCAAGTTGCAGCCTCACACAACTGACTTTTTGGACATCTCAAATCCGAAGGCCATgtgaggatatgataaaaacgctccatt-attaaaaccattccgtttcttggggaaatcatcattctaatgataatgctttgct-ttgtgacattgcag--

upper sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 7
lower sequence: AT2G21270.3 (Arabidopsis thaliana), 5'ss of exon 7
ACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagtt-gacatttattaagtttagtttgataaagctatgatat--ttacctac--caatgagtttctcttgtaaa-agtgcaattctgtcactcaaatatgttt-----------------------------------------------------------------------------------
||||||| | ||| | |||||| || ||||||||||| || || |||||  ||||||||||||||| ||||||  ||||||| ||||| || ||||| ||||||||  ||| | | |  |   |  | |  |  |||  | ||||  || || ||  ||    |||| |    || | | || | |  | |  || |  | |                                                                                       
ACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACTTACGTTAAACTACAGCCCCACACAACAGACTTCCTGGATATATCCAACCCGAAAGCCATgtgagtccgacttatttctaccctcttgtatttgagccctcatatactttcccacatcatgttgtttattgcttagagaatgtattattatatctaagttcttcccgttttctggctcgtagttgtttgatgtcactctttttatcttgttcccaatattctttactgataattgagtgaacgttgcag

upper sequence: GLYMA05G34630.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g00750.t01 (Vitis vinifera), 5'ss of exon 7
ACATTGTCAAAGTGAAAAATGTGACACTTCCAAAGGGGACATATGTTAAGTTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgacatttattaagttta--gtttgataaagctatgatatttacctaccaatgagtttctcttgtaaaagtgcaattctgtcactcaaatatgttt
||| |||  | |||||||||||||| ||||| ||||| |||||||| ||  |||||||||| |||| |||||| ||||||||||| || |||||||| ||||||||||    | || |  ||||  | | |   ||| || |  |  |  ||    |||    ||  |  |  |  |||  ||     |       ||  | 
ACACTGTGCAGGTGAAAAATGTGACTCTTCCGAAGGGAACATATGTAAAACTACAGCCCCATACAACAGACTTCTTGGATATTTCAAACCCAAAAGCCATgtgagttgttgctaataatctttattgctaggagaaggtaggtaaggtgtctcttgatgttcatcaatatttta--tgctgttgcaagagaggggaatcctg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023280|gb|BM094314.1|BM094314
EST:     TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTAT                         CTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
genomic: TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgac ... ttttatgcagCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
EST: gi|58014687|gb|CX701429.1|CX701429
EST:     TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTAT                         CTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
genomic: TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgac ... ttttatgcagCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
EST: gi|192322766|gb|FK014457.1|FK014457
EST:     TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTAT                         CTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
genomic: TTACAGCCCCACACAAAAGACTTTTTGGATATTTCCAATCCAAAAGCTATgtgagttgac ... ttttatgcagCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
EST: gi|298168906|gb|HO009836.1|HO009836
EST:     TCCAATCCAAAAGCTAT                         CTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT
genomic: TCCAATCCAAAAGCTATgtgagttgac ... ttttatgcagCTTAGAAACAACATTGAGGAATTTTTCCTGCTTGACTACTGGAGATAGCAT