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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttggtaccttttcccattttttttaattaatatgttatactaaattgacagatatgacttgttattcaagcttctgatggcacttttttgtgtttggcactataatgtacttgtcaccaatgctctcgttgcctgtgaacctactgacttgaaaacatttttaacttttgttcttttttgtgcctggtacag

Basic information

species Glycine max
transcript GLYMA05G34400.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 8
TAATGCTTATCACGTTAGTGGGTACCGCTACTTACTTGTAGATGGTGATAGAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttggtaccttttcccattttttttaattaatatgttatactaaattgac-agatatgacttgttattcaagcttctgatggcacttttttgtgtttggcactataatgtacttgtcaccaatgctctcgttgcctgtgaacctactgacttgaaaacatttttaacttttgttcttttttgtgcctggtacag
 ||||| ||||| ||| | || || || |||||||| || |||||||| ||||||||||| |||||||||||| |   ||||||||||||  |||||||||| ||   |     ||    |  |||   | ||  |  |  | ||  |   |||   | ||   |  |    | |  ||||||      | |  |  | | ||                                                                                                 
AAATGCATATCATGTTGGGGGTTATCGTTACTTACTGGTGGATGGTGACAGAAATGTATCTAGGGCTTCTCCACCGGGAAAAGTTACAACCCTAACAAAGgtttgcact-----ctgccactgtttagctcaaccacaacatcattttgtcttgtttacatgcaaaattaggtccttgcttctttataaattgatcagagcttta-----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18693007|gb|BM521855.1|BM521855
EST:     GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
EST: gi|193430529|gb|FK396359.1|FK396359
EST:     GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAA
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCT-ATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAA
EST: gi|151406090|gb|EV275905.1|EV275905
EST:     GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAG                         GAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG
genomic: GAAATGTATCCAGGGCTTCTCCAGCAACAAAAGTTACAACTTTAACAAAGgtgtgtgttg ... cctggtacagGAGTCCTTACTTGCTATGAATAAGCTTAGGCAAGAGGTGGAGTTAGAGAAG