Sequence
atgc intronic sequence ATGC exonic sequenceTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGgtatgtgtaactgttgctaaaccgattgtgaaggcctagaggtcattttggtttatccaagttgtagaatttcatatttcttgtttctttaattgaggac...
Basic information
species | Glycine max |
transcript | GLYMA05G34310.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G34310.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G01830.1 (Arabidopsis thaliana), 5'ss of exon 7
TGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGgtatgtgtaactgttgctaaaccgattgtgaaggcctagaggtcattttggtttatccaagttgtagaatttcatatttcttgtttctttaattgaggac
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TGGAAAGCTGGAGTTGGAATCAGTACCATTTGATATCCGTTCAATATTGGATGATGTCCTTTCTCTATTCTCTGAGGAGTCAAGGAACAAAAGCATTGAGgtaa--------gttttcaatcc-------aaggaataaagat-acatctatttg---gagttgtgg--ctgctaatttcttgatttcaaatttggcag-
upper sequence: GLYMA05G34310.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g06190.t01 (Vitis vinifera), 5'ss of exon 7
TGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGgtatgtgtaactg--ttgcta-aaccgattgtgaaggcctagaggtcattttggtttatccaagttgtagaatttcatatttcttgtttctttaattgaggac-
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TGGAAAATTAGAGCTCGAAGCAGTCCCCTTCAACCTTCGATCCATACTAGATGATGTCCTCTCTCTATTTTCTGAGAAGTCTAGGCACAAAGGTCTTGAGgtaacttttactgaactgtgataaaagctagtcaattgttatctgtcccttttcttt-tcttggctggaatattt---gccacacaaaaagatggctaaagattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208105075|gb|GD901832.1|GD901832EST: ATGATGTCCTTTCTCTTTTT-CTGAGAAGTCCAGGAACAAAGGTTTAGAG CTGGCGGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCT
genomic: ATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGgtatgtgtaa ... ggaagtatagCTGGCGGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCCAGGAACAAAGGTTTAGAGgtatgtgtaactgttgctaaaccgattgtgaaggcctagaggtcattttggtttatccaagttgtagaatttcatatttcttgtttctttaattgaggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT