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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgttttattccaattttctattttatatgatacttaccactggttttcacatgtcag

Basic information

species Glycine max
transcript GLYMA05G34180.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g02884.1 (Oryza sativa), 5'ss of exon 1
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgta-------gctaaataattgttttattccaattttctattttatat---gatacttaccactggttttcacatgtcag-----------------------
|| || || ||  | |||||||||||||| |||||||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||| ||||||||||||        |  | | |||   |  ||    |||    |  |||||    || ||| |     |    |  ||||                           
ACTACTGGAGTTCTGTTGCGGAGATTGCTGGTGGATAGAAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAGCGTGGCATGAATGAAGgtctgcaatcgtcataaaataaataaatctgcattcaaaaagttatagctagacactcag-gtagacgatttcatgctgaatatttttgtatttttgtgctag

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G373175_T02 (Zea mays), 5'ss of exon 7
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgt-tttattccaattttctattttatatgatacttacc--actggttttcacatgtcag-----------------------------
||||| || ||  | |||||||||||| | ||||| |||||||| |||||||| || |||||||||||||||||||| |||||| | || ||||||||||||    |  || |  |  |||||   ||||  || |  | ||| |    |    |||  ||||   |  |                                
ACCACTGGAGTCCTGTTGCGGAGATTGTTGGTGGACAGGAATTTGAAAGGTGTTACCCATGTTATTGTTGATGAAATCCATGAAAGAGGCATGAATGAAGgtctgcat-tagtcatacttattttcatttagtactaaaaatgtttagcaatgtactcatttttgtaaatttatgctaatcttttttgtgtctttgtgctag

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G48650.2 (Arabidopsis thaliana), 5'ss of exon 7
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtag--ctaaataattgttttattccaatt--ttctatt---------ttatatgatacttac-cactggttttcacat--gtcag
|| || ||||| ||| |  | || || ||||||||| | |   | |||||||| ||||||||  | |||||||| ||||||||||||||||||||||||||||    |   |||||   | |    |||   | | ||             ||| ||| | || ||||  || ||   |  |||||
ACAACTGGTGTTTTACTTAGAAGGTTACTTGTGGATCGTAGCCTGAAAGGTGTGACTCATGTCGTAGTTGATGAGATTCATGAACGTGGAATGAATGAAGgtaaattttggtaatttactaaagggaataaatgccatcagtaactgccagtatcatattaacacactctttctcttttctgtcag

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 6
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgttttattccaattttctattttatatgatacttaccactggttttcac--atgtcag
|| || ||  |||||||| | ||||| ||||| || || ||||| || ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||       |||||  | | |   ||| | |  | | |    | ||||    | || | ||   || ||||
ACTACTGGCATATTATTGAGAAGATTACTTGTTGACAGAAATTTGAAGGGTGTAACTCATGTTATCGTCGATGAGATTCATGAACGTGGAATGAATGAAGgtaatattcaaattgactgaatgtcattatttggtgtttcaatttcttat-ggtagtctgcatttatttcag

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ13473 (Selaginella moellendorffii), 5'ss of exon 7
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgttttattccaattttctattttatatgatacttaccactggttttcacatgtcag
|| || ||  |  | ||| |  | ||| |    ||    | | | || ||||| || ||||| ||||||||||| || |||||||| || |||||||||||||     |   |  || | |  |||     |  |     || | |||    ||  || |||        
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgta-----aggttctttatttctcaaaaccgtgctgagcgtggt-cttttttct--ttctcag-------

upper sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ19043 (Selaginella moellendorffii), 5'ss of exon 7
ACCACAGGTGTATTATTGCGGAGATTGCTTGTGGATAGGAATTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGgtagctaaataattgttttattccaattttctattttatatgatacttaccactggttttcacatgtcag
|| || ||  |  | ||| |  | ||| |    ||    | | | || ||||| || ||||| ||||||||||| || |||||||| || |||||||||||||     |   |  || | |  |||     |  |     || | |||    ||  || |||        
ACAACGGGAATTCTGTTGAGACGCTTGTTGACTGACCCAAGTCTCAAGGGTGTGACGCATGTGATTGTTGATGAGATACATGAACGGGGCATGAATGAAGgta-----aggttctttatgtctcaaaaccgtgctgagcgtggt-cttttttct--ttctcag-------