Sequence
atgc intronic sequence ATGC exonic sequenceGGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcatagtacatttatgttgttcctgcttcaatttattgtcttctttgtcctgtggtaagaattatgtaaatatttcaagtgaacag
Basic information
species | Glycine max |
transcript | GLYMA05G33980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g45620.1 (Oryza sativa), 5'ss of exon 6
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcatagtacatttatgttgttcctgcttcaatttattgtcttctttgtcctgtggtaagaat-tatgtaaatatttcaagtgaacag
||| |||||||| | |||||||| |||||||| |||||||| |||||||||||||| | | ||||||||||| | || || ||||| ||||||| || | | ||| | | || | || ||||| | | |||| | | | | ||| | ||
GGAACGTGAACCCATAGCACAACCCATCTCAAAACTCGAGTTTGAGTTTGAGAGAAGGAAGCTAGCAAAAGATGATGTCCGGGAATTAATTTACAGAGAGgtactgc--taat-cttttctaccatgaggattttggta-atagtcttttcttatgcatggtgtctctctctctctctatctttag-------
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g50120.1 (Oryza sativa), 5'ss of exon 7
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcatagtacatttatgttgttcctgcttca-atttattgtctt-ctttgtcctgtggtaaga-attatgtaaatatttcaagtgaacag
|| || |||||| | || || || ||||| ||||||||||| || |||| ||||||||| ||||||||||||| | || || ||||| ||||||||| | | | || ||| | | | || | | | || | | |||| ||| | | | ||||| | | ||
TGAACGCGAACCAATAGCACAGCCTATCTCAAAGCTTGAGTTTGAGTTCGAGAAGAGGAAATTGGCCAAAGATGATGTCCGGGAATTAATTTACCGAGAGgtgccactgatgaattcttttgtgaatattacgacagagctgccacttgactctttactgtactaatatacttgttaaatctctttag-------
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G062761_T01 (Zea mays), 5'ss of exon 7
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcat---agtacatttatgttgttcctgcttcaatttattgtcttctttgtcctgtggtaagaattatgtaaatatttcaagtgaacag
|| |||||||| | ||||| || ||||||||||| ||||| ||||||| ||||| || ||||||||||||| |||| |||||||| |||||||| || | |||||| || | || | | | | ||| || | || || | || | | | ||
TGAACGTGAACCCATAGCACAACCTATCTCAAAACTTGAATTTGAGTTTGAGAAGCGGAAACTGGCCAAAGATGATGTCCGAGAATTGATTTACCGAGAGgtactattgctcaattacattcttgacatcattg--tagagctgctcctttcattacttttc--tagctcttgt-tacctctctttag-------
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 8
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtg-----tgatcatag--------tacatttatgttgttcct--gcttcaatttattgtcttctttgtcct--gtggtaagaatta------tgtaaatatttcaagtgaacag
|| ||||||||| | || || || |||||||| ||||| ||||| |||||||||| ||| || ||||||||||| ||||| || ||||| |||||||| | || | ||||| ||| | ||| | | ||||| || | || || | | ||| ||| | | | || || || | | |||
AGAGCGTGAACCAACAACACAGCCAATTTCAAAGCTTGAATTTGACTTTGAGAGAAAGAAGTTAGTTAAAGATGATGTCAGAGAATTAATTTACCGAGAGgtaacaaacaaacacaaaagccttctacatatatccttttctttaatctgaatttgtttcaatgttattcattgatcctaacaatcacttttctttggattttgtaaat-atcag
upper sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 5'ss of exon 7
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcatagtacatttatgttgttcctgcttcaatttattgtcttctttgtcctgtggtaagaattatgtaaatatttcaagtgaacag
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||| || ||||||||||| || | || || | || | | | || || | | | || || ||| || | | | || | | |||||
AGATCGTGAACCTTCCACTCAACCCATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAAATTAACAAAAGATGATGTTAGGGAGTTAATATATCGAGAGgtatggggtcacaactttctt--tgatggtattgtgggtt-ttatgctgtcagtagagttataacaaatttttgtttaaattga---aacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192306379|gb|FG996139.1|FG996139EST: GAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAG ATTTTGGAGTATCATCCCCAGATGCTCCAGGAGTATCTTCGTGGTGGAGAT
genomic: GAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcat ... aagtgaacagATTTTGGAGTATCATCCCCAGATGCTCCAGGAGTATCTTCGTGGTGGAGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACCGTGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGgtgtgatcatagtacatttatgttgttcctgcttcaatttattgtcttctttgtcctgtggtaagaattatgtaaatatttcaagtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG