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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAGgtttatacttttcagaaacataatgagaaaatttgtgtgtggaaggagacattttatggttcaagtattttttgtaatcctgcctcctctgcttttcttatttag

Basic information

species Glycine max
transcript GLYMA05G33020.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33020.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 5'ss of exon 7
GCATTGGATAATTTTAACACAGCAGTTGTTTCTCCAATCTATTATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAGgt-ttatacttttcagaaacataatgagaaaatttgtgtgtggaaggagacatttt--atggttcaagtattttttgtaatcctgcctcctctgcttt---tcttatttag-----------------
||| |||||| ||| |||||||| ||||||||||| ||||| ||||| |||||||| || ||||| || || ||||| |  || |||||||||||  | ||   | || | | | | ||   | |     |   ||||  ||| | | |  |  |||      ||| || ||||      ||   |   |      ||| || |                 
GCACTGGATACTTTCAACACAGCCGTTGTTTCTCCCATCTACTATGCCTTGTTCACATCATTTACTATTTTAGCCAGTGTGATTATGTTTAAGgtactctatcatgcacacataca-tgcacatacacacgcagggaaaaagagagtatgaactgtttccccttttgttataatatcaaatcacttcagtgaaactttaattggctttgctttatttctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209708113|gb|BW671129.1|BW671129
EST:     ATATTGGCCAGCGCAATCATGTTTAAG                         GACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGCTATGTGGTTTC
genomic: ATATTGGCCAGCGCAATCATGTTTAAGgtttatactt ... tcttatttagGACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGCTATGTGGTTTC
EST: gi|193314336|gb|FK280137.1|FK280137
EST:     ATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAG                         GACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGCTATGTGGTTTC
genomic: ATGCATTGTTCACTTCTTTTACAATATTGGCCAGCGCAATCATGTTTAAGgtttatactt ... tcttatttagGACTATTCTGGTCAAAGTATAAGCAGTATTGCATCAGAGCTATGTGGTTTC