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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcatgttttaagtgaaagaatttgctttatatgtagttattttcttattttggaaacgcttgaagatatgcacttgatatattaaattattaat...

Basic information

species Glycine max
transcript GLYMA05G32460.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 7
AGCTAGCGATGCCTTGTCTGGTGAACTTTGGGAGGCAAAGAAGGATAGGATATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcatgttttaagtgaaagaatttgctttatatgtagttattttcttattttggaaacgcttgaagatatgcacttgatatatta--aattattaat-----
||| || |||||  | ||||||||||||||||||| |||||| || ||||| ||||| |||||  | ||||||||||||| ||||||||||||||| ||||||||| | | ||||   |       |||  || ||| | |   |       || |   ||| |    ||||  | ||   ||   || |  |||  ||        
AGCCAGTGATGCTCTATCTGGTGAACTTTGGGAGGTAAAGAAAGAGAGGATTTGCAAAGCTTCAGTGTATGGAAAGTTACCTGGTTGGGACTTGCGTTCTgtaagttcttttttttttt-------tttttttgataggaaacgacaaaggaatatattaaaagaaaaaagaagtacaagagaaggatgagaaatccttccaccaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26057149|gb|CA800063.1|CA800063
EST:     TATGCAAGGCTTCCATATATGGGAAGTTACCTGGTTGGGACTTGCGATCT                         GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
EST: gi|208083280|gb|GD883048.1|GD883048
EST:     TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCT                         GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
EST: gi|208097950|gb|GD893503.1|GD893503
EST:     TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCT                         GTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA
genomic: TATGCAAGGCTTCCATATATGGAAAGTTACATGGTTGGGACTTGCGATCTgtaagtgcat ... tctcacatagGTTATTGTAAAGAGTGGTGATGATTGCAGGCAGGAGCATCTGGCTGTTCAA