1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGGATGTACCAGTGGAAGCCTTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGGgtaattatttatgttccatagtaggggtgtttttcttttctaaacataacacattagtttaataatttaagctaccaagttggaccaacttatcatcataggaatttgcatcaaaattattttccactaaataattttaccccttggaattcacattcag
species | Glycine max |
transcript | GLYMA05G31730.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGG GCTTTTATGCGTTTGTCTGCTATTTTTGAAGAGAGAGGTGAAGCATATGCCEST: gi|7478924|gb|AW666458.1|AW666458
genomic: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGGgtaattattt ... tcacattcagGCTTTTATGCGTTTGTCTGCTATTTTTGAAGAGAGAGGTGAAGCATATGCC
EST: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGG GCTTTTATGCGTTTGTCTGCTATTTTTGAATAGAGAGGTGAAGCATATGCCEST: gi|254327598|gb|GR837207.1|GR837207
genomic: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGGgtaattattt ... tcacattcagGCTTTTATGCGTTTGTCTGCTATTTTTGAAGAGAGAGGTGAAGCATATGCC
EST: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGG GCTTTTATGCGTTTGTCTGCTATTTTTGAAGAGAGAGGTGAAGCATATGCC
genomic: CTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGGgtaattattt ... tcacattcagGCTTTTATGCGTTTGTCTGCTATTTTTGAAGAGAGAGGTGAAGCATATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGATGTACCAGTGGAAGCCTTGGCACAGAGAATTGCAGCTGTAGGAACTAATTCTCGTCCCCTTCTAAACTATGAAGCAGGGGATCCTTACACACGGgtaattatttatgttccatagtaggggtgtttttcttttctaaacataacacattagtttaataatttaagctaccaagttggaccaacttatcatcataggaatttgcatcaaaattattttccactaaataattttaccccttggaattcacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC