1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacctctgatggtgatgtataattttattttgttattcttgtttctcaatgaatgatttctttctgtcatgccag
species | Glycine max |
transcript | GLYMA05G31080.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTAAAGGTTCTGGAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|17152831|gb|BM142764.1|BM142764
genomic: CTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacc ... gtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|21637793|gb|BM107948.1|BM107948
genomic: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacc ... gtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|5677370|gb|AI938500.1|AI938500
genomic: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacc ... gtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: TTTGGAGAGGCTGGGCTTAAAGGTTCTGCAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAATEST: gi|26057478|gb|CA800392.1|CA800392
genomic: TTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacc ... gtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
EST: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGG GATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
genomic: ATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacc ... gtcatgccagGATTTCAGCAATCCATTTGATCTGTTTGAATCACTGTTTGAGGGCATGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTTATCAGATGATGAGAAACGATCCATATATGACAGATTTGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGGATGGGGgtaagttacctctgatggtgatgtataattttattttgttattcttgtttctcaatgaatgatttctttctgtcatgccag
- - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GAGAGG