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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAAATTCAAATAATGGAAGCCAATTTACCTTTTTTTTGACTGCTCCTTTGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAgtaagcaatgcacgaataatcttaacccttctcagattaacttttaattcttgttggtctaattttgtgttaacctgtag

Basic information

species Glycine max
transcript GLYMA05G30980.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254335756|gb|GR847284.1|GR847284
EST:     GTCAGCA-TTTGCCAAATGATTGGTTTCTCCCCCCAACGAGTCTGATACA                         GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
genomic: GTCAGCATTTTGCCAAATGATTGGTCTCT-CCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: gi|51336496|gb|CO980362.1|CO980362
EST:     TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACA                         GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
genomic: TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: gi|8284179|gb|BE021738.1|BE021738
EST:     ACGAGGTCTGATACA                         GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
genomic: ACGA-GTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
EST: gi|254335755|gb|GR847283.1|GR847283
EST:     TGTCAGCATTTTGCCAAATGATTGGTTTCTCCCCCAACGAGTCTGATACA                         GATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG
genomic: TGTCAGCATTTTGCCAAATGATTGGTCTCTCCCCCAACGAGTCTGATACAgtaagcaatg ... taacctgtagGATGTCTACAATGAAGCAGAGAACATAATCGCTAATGCTTTGACTGAGTGG