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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTCGCCGTTTTGgtatgtttgtaattgcattgcttttatataaaatgttgagagtttatatcacatgattgatgcacaccatgttctgctgcttctgcaaattctagtgcat...

Basic information

species Glycine max
transcript GLYMA05G29870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G29870.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0021g02230.t01 (Vitis vinifera), 5'ss of exon 7
GTTGAAAAGCTGGGAAAGGATTCACTAATTAACTGTGCCAAGACCAGTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTCGCCGTTTTGgtatgtttgtaattgcattgcttttata--taaaatgttgagagt----ttatatcacatgattgatgcacaccatgttctgctgct-tctgcaaattctagtgcat
|||||||| || ||||| |||||||| || || ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||   |||||||||| |   |     ||  |||||||  |||||     | ||     | | | ||||  |  | || ||| ||| |     |||| |||      | ||      
GTTGAAAAACTTGGAAAAGATTCACTTATAAATTGTGCCAAGACAAGCATGTCCTCAAAGTTGATAGCTGGTGACAGTGACTTCTTCGCAAGTTTGgtatgtgttccacctttttttttttatagttaaaagagcaaaagcagactaagaacacagaaagggtgtacatcatataa-attgctgtctattggctata------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254334339|gb|GR844124.1|GR844124
EST:     GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTCGCCGTTTTG                         GTTGTGGATGCAGTGCAAGCTGTAAAAATGACCAATGCTCGAG-TGAAGTT
genomic: GTATGTCCTCAAAGTTGATAGCTGGTGATAGTGACTTCTTCGCCGTTTTGgtatgtttgt ... tttttcacagGTTGTGGATGCAGTGCAAGCTGTAAAAATGACCAATGCTCGAGGTGAAGTT