Sequence
atgc intronic sequence ATGC exonic sequenceGTCGCTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATgtgagtaaatcttttcaaatttaggtttagtgctgtagattgtcctttctcttactaggttttagatcttctcag
Basic information
species | Glycine max |
transcript | GLYMA05G28630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G28630.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv15s0024g00080.t01 (Vitis vinifera), 5'ss of exon 7
GTCGCTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATgtgagtaaatcttttcaaatttaggtttagtgctgtagattgtcctttctcttactaggttttagatcttctcag---------------------------------------------------
|| | ||| ||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||||||| || ||||| ||||| ||||| ||||||||||| | || ||| || | || | | || |||| ||| | ||| || | ||
TTCTTTGCATCATGTCGACAAGGACCTCCTTGGGTGGTGGTTATGTGAACGACAAGTTAAATCTGGAGCACTAAATGGTCGTCCAGAGAAGCTTCCTGATgtatg---attctttttttcttccatatatttatttat-ttgttatttattttagagaagccataatttcctataaaaatcatttttatagttttcttactataagttcctattgtatcacttcag
upper sequence: GLYMA05G28630.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0134g00150.t01 (Vitis vinifera), 5'ss of exon 7
GTCGCTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATgtgag-----taaatcttttcaaatttaggtttagtgctgtagattgtcctttctcttacta-ggttttagatcttctcag-------------------------
|| ||| ||| ||||||||| ||||| ||||| ||||||||||| || || || || ||||||||||| || ||||| || || ||||| ||||||||||| | |||| || | | | | || | ||||| | | | | |||| | | ||||| ||
TTCTCTACATCATGTTGACAAGGACCTCCTTGGGTGGTGGTTATGTGAACGGCAAGTCAAATCTGGAGGACTAAATGGTCGGCCAGAGAAGCTTCCTGATgtacaatccctttgcctttctttccttttttctctttcaagggaccatactttcccatgcaatggttcttggtcttcacactgaagtttcaattgtatctcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19452569|gb|BM953979.1|BM953979EST: GACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGAT GTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTA
genomic: GACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATgtgagtaaat ... atcttctcagGTCTGCTACTCATGGTGGGTTCTTTCTAGCCTGATCATGATTGATAGGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCGCTAGATCTTGTTGACAAAGACCTACTTGGTTGGTGGTTATGCGAGCGACAGGTTAAATCTGGAGGTCTGAATGGGCGTCCTGAGAAACTTCCTGATgtgagtaaatcttttcaaatttaggtttagtgctgtagattgtcctttctcttactaggttttagatcttctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG