1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGAATATGCTTTTGGTCCATCTGGGTCCTCTCAGGAATTGGCTAATGTTCCTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAGgtgagagaagtgagagaattatcatgttctcgtcttcttatttttttggtttaaattttgaactaatttgaaatgtaaaactaattactgaaaatggggatgcag
species | Glycine max |
transcript | GLYMA05G28260.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAG GAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGGEST: gi|57574566|gb|CX547541.1|CX547541
genomic: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAGgtgagagaag ... ggggatgcagGAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGG
EST: ACTGTGTACTACGAAGTTGAGCTGCTTTCC-TTGNTAAAG GAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGA-TGAGGGCAGCTGEST: gi|9987554|gb|BE661662.1|BE661662
genomic: ACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTG-TAAAGgtgagagaag ... ggggatgcagGAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGA-GGCAGCTG
EST: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAG GAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGGEST: gi|11273761|gb|BF324156.1|BF324156
genomic: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAGgtgagagaag ... ggggatgcagGAAAAGGAATCGTGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGG
EST: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAG GAAAAGGAATCG
genomic: CTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAGgtgagagaag ... ggggatgcagGAAAAGGAATCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATATGCTTTTGGTCCATCTGGGTCCTCTCAGGAATTGGCTAATGTTCCTCCTAATTCCACTGTGTACTACGAAGTTGAGCTGCTTTCCTTTGTAAAGgtgagagaagtgagagaattatcatgttctcgtcttcttatttttttggtttaaattttgaactaatttgaaatgtaaaactaattactgaaaatggggatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT