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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttctatcatagtaaaacaatatggaaataatactatcattactttatcatgtttacctacctgtgtagtttatatatttcctttgatttctatctttgcctttgcatttgcatttacag

Basic information

species Glycine max
transcript GLYMA05G26450.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 8
GCAAGAAATGATGGATCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttctatcatagta---aaacaatatggaaataatactatcattactttatcatgtttacctacctgtgtagtttatatatttcctttgatttctatctttgcctttgca---tttgcatttacag--------------------------------------------
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GCAGGAATTAATGGACTTGGTTAATAAAAGCGGGAAATTCAGTAAAAAGTTTGAGGCTTTTACAGgtatgcttcttaataatagggaaagcagatgcacccaagact-tcataaatg-accaagtcaaaaaataactatcctcaatgtttatcacttgttcagtattttatgatcgacaatgtctgattcttcgatattctgaaaaaacctagatattgacgcggttgattctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825955|gb|BE209685.1|BE209685
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAA
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAA
EST: gi|120494805|gb|EH222972.1|EH222972
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
EST: gi|209712191|gb|BW681397.1|BW681397
EST:     TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTG                         GAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG
EST: gi|8826056|gb|BE209848.1|BE209848
EST:     TCTGGTTAATAAAAGTGGGAAATTCANTAAAAAATTTGACAAGTTTACTG                         GGACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCANG
genomic: TCTGGTTAATAAAAGTGGGAAATTCAGTAAAAAATTTGACAAGTTTACTGgtgagttcta ... gcatttacagGAACTGATGGCCCTCTTGGAAAGAGATTAAATAACACAAGAACCAGCCAGG