1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACAGAGGATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtatttttcattattatgaattatttcctttgttgtacgatgtttcttcagtcttcacatattttaaggtgctgctgaatagttatatttaactca...
species | Glycine max |
transcript | GLYMA05G26250.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|193635346|gb|FK584757.1|FK584757
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|31464708|gb|CD406721.1|CD406721
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGTAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCCAEST: gi|22931701|gb|BU548840.1|BU548840
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|9440046|gb|BE440557.1|BE440557
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTNTGGACTTTTCAAEST: gi|193703135|gb|FK639637.1|FK639637
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|22523485|gb|BU082296.1|BU082296
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|254318154|gb|GR832322.1|GR832322
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|193615633|gb|FK561510.1|FK561510
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGC-GGGAA-CCTTTGGAC-TTTCAAEST: gi|27427274|gb|CA938794.1|CA938794
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: CAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|193492480|gb|FK455674.1|FK455674
genomic: CAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAAEST: gi|193451517|gb|FK421395.1|FK421395
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
EST: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTG AAGCTGGAGGTATTGCCATGGATGCTGC-GGGAACCCTTTGGACTTTTCAA
genomic: ATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtattt ... acttctgtagAAGCTGGAGGTATTGCCATGGATGCTGCGGGGAACCCTTTGGACTTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTGTCAAGAGGAGATGGGGCTATATATTTGCGTTTCCCTCACAGAGGATACCGTGAAAAAATATGGGATCATGCTGCTGGCAGCATTGTTGTGACTGgtgtgtatttttcattattatgaattatttcctttgttgtacgatgtttcttcagtcttcacatattttaaggtgctgctgaatagttatatttaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT