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AGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACCACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcattcgtcttgggctatatatatgcataattctattattacatctgtcatctaagcaaaaattgtaatttctttcttctag
species | Glycine max |
transcript | GLYMA05G25980.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTG GAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGEST: gi|193532789|gb|FK492819.1|FK492819
genomic: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcatt ... tttcttctagGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTG
EST: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTG GAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGEST: gi|208275480|gb|GE077764.1|GE077764
genomic: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcatt ... tttcttctagGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTG
EST: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTG GAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGEST: gi|193459087|gb|FK424260.1|FK424260
genomic: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcatt ... tttcttctagGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTG
EST: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTG GAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTG
genomic: TTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcatt ... tttcttctagGAGAAAGAAGGCTTGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACCACAGGCCGGGGTTCTTCTGGGGTTGGTTTGACAGCTGCAGTTACTTCAGATCAAGAAACTGgtaaatcattcgtcttgggctatatatatgcataattctattattacatctgtcatctaagcaaaaattgtaatttctttcttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA