Sequence
atgc intronic sequence ATGC exonic sequenceGACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgtgattaatgctctaaaaatgaatatattgcggtcaatttccttctttaattattttaattcattagaaattcaagtcaacttataagaccgattgacgg...
Basic information
species | Glycine max |
transcript | GLYMA05G24890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G24890.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g07880.1 (Oryza sativa), 5'ss of exon 11
GACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgt-gattaa--tgctctaaaaatgaatatattgcggtcaatttccttctttaattattttaattcattagaaattcaagtcaacttataagaccgattgacgg
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GACTGCTTGTGTGTTAGCTGTGGCAAAAGCACGTGACACATTTGAGCCTTATCTTCACCAGgttggttagcttacctcatgggtgggcacatta--ataatcacatttagatggtcctgttcagctttcatgattgttattccacacttgag-ctactggaata
upper sequence: GLYMA05G24890.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G005848_T01 (Zea mays), 5'ss of exon 11
GACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgt-gattaatgctctaaaaatgaatatattgcggtcaatttccttctttaatt--attttaattcattagaaattcaagtcaacttataagaccgattgacgg
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GACTGCTTGTGTAATTGCCGTGGCAAAAGCACGTGACACGTTTGAGCCATTCCTTGATCAGgttggtcagcttgcctcaagtaggctaatta---ttgatctgccatttgaatttcatcatgttccatttccagatatatttgtcatactctgtgtgattatgg
upper sequence: GLYMA05G24890.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G19720.2 (Arabidopsis thaliana), 5'ss of exon 11
GACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgtgattaatgctctaaaaatgaatatattgcggtcaatttccttctttaattattttaattcattag--aaattcaagtcaacttataagaccgattgacgg
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AACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAGgtgacatagatatagctacttttttctttttctttcgtggaggatggaaagcaattttactaattagttaaggtgtactgtacgtaaaaaaaaaaatgaa--
upper sequence: GLYMA05G24890.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 5'ss of exon 11
GACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgtgattaatgctctaaaaatgaatatattgcggtcaatttccttctttaattattttaattcattagaaattcaagtc--aacttataagaccgattgacgg
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AACTGCTTGTGTGATAGCTGTTGCAAAGGCTCGAGATACATTTGAACCTTTTCTTCATCAGgtgagttgtatctgtagtccatattggcccttgattggatctccttttgagcagattg-tgaattgactactttgttttaaatctacaattgttgttggca-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15204769|gb|BI427537.1|BI427537EST: TAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAG TTGGGGTCCAGGCTGTTGTATATACTTAAGAGATTGCTTCCGATCTCTGTT
genomic: TAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgtgattaatg ... cttgacacagTTGGGGTCCAGGCTGTTGTATATACTTAAGAGATTGCTTCCGATCTCTGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAGgtgattaatgctctaaaaatgaatatattgcggtcaatttccttctttaattattttaattcattagaaattcaagtcaacttataagaccgattgacgg
- - - - - - - - GCTGTT
- - - - - - - - - - - GCAAAG