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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag

Basic information

species Glycine max
transcript GLYMA05G22970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g03250.1 (Oryza sativa), 5'ss of exon 3
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaat-aatatatttcttttttctcttccatgtttccactctcaagttgcagtaactg-tgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag
| || ||||| ||||| || ||||| |||||||| ||||| || ||||| |||||||||||||| || ||||| ||||| ||||| || ||||   |||| |||  | ||    ||| |  | | |||    ||| | || |     ||  || | | |  ||||||   |      |  | | | | | | |                   
GTGGGTATGACATGGAGGAGAAAGCGGCGAGAGCGTATGACCTGGCGGCGCTCAAGTATTGGGGCCCTTCCACACACATCAACTTCCCGgtaa--ttaatcaattcaattaaaatttttgattc-tgtaagtactgttaattaat--tagttggttaattgaataatgtgcatgcatatgtatgtatgtatgcag-----------------

upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G37750.1 (Arabidopsis thaliana), 5'ss of exon 5
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag
| |||||||||||||| || ||||||||  |||| |||||||| || ||||||||||| ||||| ||||| |||||||  || ||  ||||||| |            |||||| |    |  |||| |   || | |  |||  |||    | | | | ||||||   | || || ||||                             
GAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTGCACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTgtaaatca-----------tcttttctaaactttatgtct---ctttgaccttgttgtatgatttatttatataatatgataatggatatttgaag-------------------------

upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0151g00440.t01 (Vitis vinifera), 5'ss of exon 4
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag
|||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| || || || || || || || |||      ||||| |    |   ||    | |  || |    || |    |    | || ||  | |  | |  |    |  ||| ||                                
GGGGTTATGACATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCAGCACTTAAGTATTGGGGACCTTCTACCCATATCAATTTCCCGgta------ataatttgaaccccattggagtgcagtgat----ctgttggttctttgcaattg-aaatgcagtcgtttgttttttggcag-------------------------------

upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ26861 (Selaginella moellendorffii), 5'ss of exon 4
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag
|||||||||| |  ||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||  | ||   ||| ||||||||||||| | |         || || || | |  | ||||     |||| ||||        || |||  |||| ||    | |  ||| |||                               
GGGGTTATGACAAAGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtaagatt-------ccttcctcttgtattattcatga----actcacaag--------accgtgtgtaaacta-cgttttggttggcatcag----------------------------

upper sequence: GLYMA05G22970.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ21317 (Selaginella moellendorffii), 5'ss of exon 4
GGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaataatatatttcttttttctcttccatgtttccactctcaagttgcagtaactgtgactaaaataataatctcattgacatttttttcttttccattctcttctaataacag
|||||||||| | |||||| ||||| ||| |||| |||||||| ||||| |||||||||||||||||  | ||   ||| ||||||||||| | | |         || || || | |  | ||||     |||| ||||        || |||  |||| ||    | | |||| |||                               
GGGGTTATGACAAGGAAGAGAAAGCAGCGCGAGCGTATGATCTGGCGGCGCTCAAGTATTGGGGACCTACGACCACCATCAACTTTCCTgtgagatt-------ccttcctcttgtattattcatga----actcacaag--------accgtgtgtaaacta-cgttttgattggcatcag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14126414|gb|BG790852.1|BG790852
EST:     ATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCT                         TTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAA
genomic: ATCTAGCGGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTTCCTgtaaaactaa ... ctaataacagTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACTAGACAA