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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACTATGGGTATGAGGACTGCATTGGTTTAAAAGTAAAGCCACGCCAAGGGGATGGTCTTCTATTTTATTCATTGCTCACTAATGGTACAATTGATCCGgttagtattgttcatttgttctcgtgatttttaacttgtcatgttgtcgtgtgggtaagactagattaacaaccccaaaggacaaaatgtaagactgcga...

Basic information

species Glycine max
transcript GLYMA05G22270.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G22270.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0129g00460.t01 (Vitis vinifera), 5'ss of exon 7
TAACTATGGGTATGAGGACTGCATTGGTTTAAAAGTAAAGCCACGCCAAGGGGATGGTCTTCTATTTTATTCATTGCTCACTAATGGTACAATTGATCCGgttagtattgttcatt--tgttctcgtgatttttaacttgtcatgttgtcgtgtgggtaagactagattaacaaccccaaaggacaaaatgtaagactgcga
  |||| |  |   |    || |||||||| ||||||||||||| |||||||||||| |||||||| || ||| || || | |||||||| |||||||| || ||||||  | |||    | ||| | |   | |     ||||    |  | | |  |||    | ||    |    ||   | |  |   |   ||  | 
AGACTACGATTTCCAAAGGTGTATTGGTTTGAAAGTAAAGCCACACCAAGGGGATGGACTTCTATTCTACTCAATGTTCCCAAATGGTACTATTGATCCCgtgagtatttcttattgtcatcctcatcaacatcacacaatcataactttttattgacaagga-ggttttttcattgtaattcaaaggaaaaatccctttg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192304582|gb|FG997926.1|FG997926
EST:     GGGATGGTCTTCTATTTTATTCATTGCTCACTAATGGTACAATTGATCCG                         ACATCACTCCATGGGAGCTGCCCCGTGATAAAAGGGGAGAAGTGGGTGGCT
genomic: GGGATGGTCTTCTATTTTATTCATTGCTCACTAATGGTACAATTGATCCGgttagtattg ... tctttggcagACATCACTCCATGGGAGCTGCCCCGTGATAAAAGGGGAGAAGTGGGTGGCT