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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaattatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat...

Basic information

species Glycine max
transcript GLYMA05G14330.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 8
AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaag-tgaatatacatcactta----cagtgatgtaattatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttat-cctcttatat
| ||| |||||||||||| | |||||||| ||||||||||| || ||||||| | |  |    | | |||     | |||| || || | |  |          | | |||      |  |   |||      | || | || ||| ||||  
AAATACTTCGGTGCTGCATTGGGGAAGGGAAGGCAGGCTGCAAAGACgtaagcttaccactttttatttaactttaatgatatatttgtttcttgttctttgccaatgcataaagcataataaattaa-----acatttaatgccttttatt-

upper sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 7
AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaat-tatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat--
|| || || |||||||||||||| || ||||| |||||||||||||||||||| |   |  ||   ||  | || |||  | ||| |    ||||    |  || |   | |  || |  |        |   |  |  |    | |   
AGGTACTTTGGTGCTGCAATTGGAAAAGGCAGACAGGCTGCTAAAACgtaagttacagtttatttgtttgactg-tgtgttatatatggataatcctgaaggtaaaaaagatccgcccattccc--ccaacccccaacacatgcacaccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193544395|gb|FK502650.1|FK502650
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|23726961|gb|BU761493.1|BU761493
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAATTAGAGCTTGCTGATATGACATGTCGACAAAGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192295112|gb|FG986831.1|FG986831
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192295381|gb|FG986995.1|FG986995
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|193568471|gb|FK522624.1|FK522624
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAA
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAA
EST: gi|31309584|gb|CD394787.1|CD394787
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192312343|gb|FK005347.1|FK005347
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192320029|gb|FK013357.1|FK013357
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192324604|gb|FK018730.1|FK018730
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|208085744|gb|GD882390.1|GD882390
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         NGAGATTGAAAAGTTAAAGCTTGCTGATATGAC
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGAC
EST: gi|151400518|gb|EV270332.1|EV270332
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|15200376|gb|BI424317.1|BI424317
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGA
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGA
EST: gi|15202371|gb|BI425366.1|BI425366
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|213590582|gb|DB973327.1|DB973327
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|22927906|gb|BU545045.1|BU545045
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|14205743|gb|BG839421.1|BG839421
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192332050|gb|FK024552.1|FK024552
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|151409026|gb|EV278834.1|EV278834
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|193480530|gb|FK446852.1|FK446852
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAGGCTTGCT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCT
EST: gi|254338069|gb|GR849701.1|GR849701
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|151410622|gb|EV280437.1|EV280437
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192303719|gb|FG994557.1|FG994557
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATCGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|17963995|gb|BM270737.1|BM270737
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|192320028|gb|FK013356.1|FK013356
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGGTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|9439895|gb|BE440407.1|BE440407
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|151411428|gb|EV281239.1|EV281239
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|298174725|gb|HO014756.1|HO014756
EST:     AGATATTTCGGCGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|193445806|gb|FK414045.1|FK414045
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: gi|207713803|gb|GD696262.1|GD696262
EST:     AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC                         AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaattatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat

- - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT