1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaattatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat...
species | Glycine max |
transcript | GLYMA05G14330.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|23726961|gb|BU761493.1|BU761493
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAATTAGAGCTTGCTGATATGACATGTCGACAAAGGGTTATEST: gi|192295112|gb|FG986831.1|FG986831
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|193568471|gb|FK522624.1|FK522624
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAEST: gi|208085744|gb|GD882390.1|GD882390
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAA
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC NGAGATTGAAAAGTTAAAGCTTGCTGATATGACEST: gi|151400518|gb|EV270332.1|EV270332
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGAC
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|15200376|gb|BI424317.1|BI424317
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGAEST: gi|213590582|gb|DB973327.1|DB973327
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGA
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|298174725|gb|HO014756.1|HO014756
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGCGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|151409026|gb|EV278834.1|EV278834
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|207713803|gb|GD696262.1|GD696262
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|193480530|gb|FK446852.1|FK446852
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAGGCTTGCTEST: gi|151410622|gb|EV280437.1|EV280437
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|192303719|gb|FG994557.1|FG994557
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATCGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTATEST: gi|193445806|gb|FK414045.1|FK414045
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
EST: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAAC AGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
genomic: AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaat ... ttatttgcagAGAGATTGAAAAGTTAAAGCTTGCTGATATGACATGTCGACAAGGGGTTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATATTTCGGTGCTGCAATTGGGAAGGGCAGGCAGGCTGCTAAAACgtaagtgaatatacatcacttacagtgatgtaattatgtactaaatcaaataactacatttgttttgctctgttaggggtgatatcttatcctcttatat
- - - - - TGCTGC
- - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggtga