Sequence
atgc intronic sequence ATGC exonic sequenceGCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttttgtttagtacatataccattttcacctggatgatcagtttaggatcaattaatcaagttaattttgttttatttgttttttatttttaatttttag
Basic information
species | Glycine max |
transcript | GLYMA05G09360.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G23430.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttttgtttagtacatataccattttcacctggatgatcagtttaggatcaattaatcaagttaattttgttttatttgttttttatttttaatttttag
| ||||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| | ||| |||||||||| |||||| || | | | | ||| ||| || |||| || | | | ||||| || | | || | |
GTTCAGCTGATAGAACTGTAAAATTCTGGGATCTGGAAACATTCGAGCTGATTGGTTCTGGTGGACCTGAGgtacaacttgttt------tacgctaagtcaaattgg-tga-cattttattttccctctacct--ttaatattctcattttcgctag-----------------
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttttgtttagtacatataccattttcacctggatgatcagtttaggatcaattaatcaagttaattttgttttatttgttttttatttttaatttttag
| ||||| |||| || || |||||||||||||| ||||| || |||||||||||||| | ||| |||||||| | |||| | ||| || | | | ||| | || || || | | || || | | | | |||||| | || ||||
GTTCAGCTGATAAGACTGTAAAATTCTGGGACCTTGAAACATTCGAGCTTATTGGTTCTGGTGGAACTGAGgtatcatgtgtt----gtctgtactgcttctatttatgcattgagtcgaattataagtattcgatct----ttaattcaactttctaatattttcatttcttag
upper sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 6
GCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttt-tgtttagtacatataccattttcacct----ggatgatcagtttaggatcaattaatcaagttaattttgttttatttgttttttatttttaatttttag------------------------
| ||||| |||||||| ||||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||| ||| || || | | | || | | || | ||| || || | | | | || | ||| || | | |||| | | | ||| |
GTTCAGCTGATAGAACTGTTAAATTCTGGGACCTTGAAACTTTTGAGTTGATTGGTTCAGCTGGACCTGAGgtaaatttatgctttatggctttgtcactgttggctcttaataagataagcctaagtttcagcgttgaaaaagtatctgtattttct-ttttatgtggatgattaccacctgacttcttctcttctattctagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207836844|gb|GD807961.1|GD807961EST: AATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAG ACAACGGGAGTGCGTTCTCTTACTTTTAGTCCTGATGGGAGGACCCTGCTT
genomic: AATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttttg ... taatttttagACAACGGGAGTGCGTTCTCTTACTTTTAGTCCTGATGGGAGGACCCTGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCAGCAGATAGAACAGTTAAATTCTGGGACCTCGAAACCTTTGAGCTTATTGGTTCAGCTGGTCCTGAGgtactttttgtttagtacatataccattttcacctggatgatcagtttaggatcaattaatcaagttaattttgttttatttgttttttatttttaatttttag
- - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG