Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttgataagtattgcatgataaaggtgcaaggggctcatgtattcttgaacatctgtttcag

Basic information

species Glycine max
transcript GLYMA05G00370.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g07440.t01 (Vitis vinifera), 5'ss of exon 7
TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttga--taagtattg-catgataa--aggtgca-----aggggctcatgtattcttgaacatc-tgtttcag-------------------------
|||||||| | ||| ||||    |||  | ||  |  |||| | || |||||||| |||| ||||||||||||||||||| || ||||| |||||||||||||    |   ||| | |||  |  |  |||||   |||  ||  |||  ||     |    ||   | ||  |   |  || |||||                            
TGGAATGATCATGCTACTAATGTAGGGCAGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTTAAAGTTGGAGACTTCCAAGgtaattctccttgttttcttgaagtttggtattaatatggcaattaggcacattctcaaaaacttgagaatgataagaagtcctgtttgtaatgttctcttcatatcttgttttag

upper sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0047g00870.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttga--taagtattgc-atgataa--aggtgca-----aggggctcatgtattcttgaacatctgtttcag----------
                              ||  |  |||| | || |||||||| |||| || ||||||||||||||||||| ||||| |||||||||||||        ||| | |||  |  |  |||||   |||  ||  | |  ||     |    ||   | ||  |   |  ||   ||             
------------------------------GAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaagtttggtattattatggcaattaagcacattctcaaaaacttgagaatgataagaagtcctctttgtaatgttctct

upper sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0587g00010.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttgataagtattgcatgataaaggtgc-aaggggctcatgtattcttgaacatctgtttcag-----------------------------------------------
                            | ||  |  |||| | || |||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||        ||| | |||  ||   | |   || ||     | | ||    |    | ||  |   |  ||   ||                                                  
----------------------------AGGAATTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGGTAATTCCCCTTGTTTTCTTGAATTTTTgtattattatggcaattctaaaaaacatgagaatgataagaagtcctctttgtaatgttctcttcatatcttgttttagttgtatcactgtcaacatcga

upper sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0088g00230.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttga--taagtattgc-atgataa--aggtgca-----aggggctcatgtattcttgaacatctgtttcag--------------------------
                              ||  |  |||| | || |||||||| |||| || ||||||||||||||||||| ||||| |||||||||||||        ||| | |||  |  |  |||||   |||  ||  | |  ||     |    ||   | ||  |   |  ||   ||                             
------------------------------GAATTGTTGGATAATGCTGATAAATTTCCAATTATTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaagtttggtattattatggcaattaagcacattctcaaaaacttgagaatgataagaagtcctctttgtaatgttctcttcatatcttgttttag

upper sequence: GLYMA05G00370.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0037g00650.t01 (Vitis vinifera), 5'ss of exon 3
TGGAATGAACTTGCAACTACCACAGGAGAAGAGCTACTGGACATTGTTGATAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttaggtgtatgctttgataagtattgcatgataaaggtgc-aaggggctcatgtattcttgaacatctgtttcag-------------------
|||||||| | ||| ||||    |||  | ||| |  |||| | || |||||||| |||| |||||||||||||||||||||| ||||| |||||||||||||        ||| | |||  ||     |   || ||     | | ||    |    | ||  |   |  ||   ||                      
TGGAATGATCATGCTACTAATGTAGGGCAGGAGTTGTTGGATAATGCTGATAAATTTCCAATTGTTGCAATTAAATCTCTCAAAGTTGGAGACTTCCAAGgtaattccccttgttttcttgaattttggtattattatggcaattctaaaaaacatgagaatgataagaagtcctctttgtaatgttctcttcatatctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017697|gb|CX704439.1|CX704439
EST:     AAAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAG                         GTGTTTCTTTGTCAACTATAGGCAGAAGTGTGGTTCTGGTAAATCCAGACA
genomic: -AAATCTCCAGTTGTTGCAATTAAATCTCTCAAGGTTGGGGACTTCCAAGgtatgcttag ... tctgtttcagGTGTTTCTTTGTCAACTATAGGCAGAAGTGTGGTTCTGGTAAATCCAGACA