Sequence
atgc intronic sequence ATGC exonic sequenceTTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGCACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGgtgctttgtatctgttgcatggattctattttttcacatttaatatatccattagctctggcatcaaattgtccttcctctttggtttgtataagactta...
Basic information
species | Glycine max |
transcript | GLYMA04G43220.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G43220.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S18_231V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGTG-ATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGCACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGgtgctttgtat--ctgttgcatggattctattttttcacatttaatatatccattagctctggcatcaaattgtccttcctctttggtttgtataagactta-----------------------------------------------------------------------
|||| | || |||||||||||||| |||||||| |||| ||| ||||| ||| |||| |||||||||||||| ||||||||||| || ||||| ||||| || ||| ||| || | | || ||| | || ||||| | ||| | || | |||| | | | | ||
-TGTGGACCATTATGGTACAATGCGCATACAGGGCAACCGGGAGTACTCGATAAAATTGAAGTTCAAGGAACAATCAATAATTGATCGCAACCCTCATCAGgtttgttatatttctgctgagcttgctacacgcattagcatgtgat-catccaagtttgtcgtgtccaatctcattttacagtttgatggacttgacatttcgagatggctaaactttgcatcttttgatttgaatttctgttaatctgtgctagcgaatttgatgttggcag
upper sequence: GLYMA04G43220.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S427_40V6.1 (Physcomitrella patens), 5'ss of exon 7
TTGTG-ATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGCACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGgt---gctttgtatc---------tgttgcatggattctattttttcac--atttaatatatccattagctctggcatcaaattgtccttcctctttggtttgtataagactta------------------------------------------------------------
|||| | || |||||||| ||||| |||||||| |||| |||| ||| ||| |||| |||||||||||||| ||||||||||| || ||||| ||||| | || | | | || | || |||||| ||| | | | | | ||| | | || | || | || | | || | | |
-TGTGGACCATTATGGTACCATGCGCATACAGGGCAACCGTGAGCTCTCCATAAAATTGAAGTTCAAGGAACAATCAATAATTGATCGCAACCCTCATCAGgttttgtttcattttaacttagcataccacacgaatcatattttatcattgaagtgttttgtgcat-gatttcattgtaaaggtatcttgccgttgacatctggaggtagccaaacctgccatctttgagtttcaatcttgcttagtctgtcttggtgaatttgatgttcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|16106189|gb|BI893929.1|BI893929EST: GATCGAAATCCTCACCAG GTTCATGGTATCATTCAAGATAGTAACGGAAAGACTGTATCAACTTTGTTT
genomic: GATCGAAATCCTCACCAGgtgctttgta ... gcctttctagGTTCATGGTATCATTCAAGATAGTAACGGAAAGACTGTATCAACTTTGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGCACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGgtgctttgtatctgttgcatggattctattttttcacatttaatatatccattagctctggcatcaaattgtccttcctctttggtttgtataagactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc