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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAGTCTGGGTATTCGTATGATTGCATATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATATTCATCATCCAAACTTCCGAGTGGGCCAAGGTTTgttgatatttaatcaaatgttttagaacgctacacatgattaacttaatacaagcctaattcattactagctttttcttgtagtacttttgtaattaataatcacatttcacaag

Basic information

species Glycine max
transcript GLYMA04G40970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0098g01180.t01 (Vitis vinifera), 5'ss of exon 5
----TGACAGTCTGGGTATTCGTATGATTGCATATAGTCCTCTAGGACTTGGAATGCTTACTGGGAAATATTCATCATCCAAACTTCCGAGTGGGCCAAGGTTTgttgatatttaatcaaatgttttagaacgctacacatgattaacttaatacaagcctaattcattactagctttttcttgtagtacttttgtaattaataatcacatttcacaag
    ||    ||| ||||| ||  ||||| | ||||||||||| || ||||| |||||||||||||||||| || | |||||||||||  | || ||  |||   |  || | |  |    | | || ||   |   |       || || |   ||    |||  |  |  |      |   |  | |   |   ||  || ||  |           
TATGTGGTTCTCTCGGTATACGCTTGATTTCTTATAGTCCTCTGGGGCTTGGCATGCTTACTGGGAAATATACACCTTCCAAACTTCCACGAGGACCTCGgtacatgaat-tcttttaggctatgtttgattcccgga------aaatttgagggaa----aatgtaaaagaaagaaaatagagaggaaaagtgaaaaaaaaaaaaaatga--------