1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGGATCTTTCTTTGAGAAGATCTTGTCCCGGAAGCTTTGAGAATAAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGgtaactgctaaaaacccttgttattcttattttaaatttttttgaagttgcttctagttcccattatctggtagaaatcagttggttgcttgtatttgtc...
species | Glycine max |
transcript | GLYMA04G40640.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCG GTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTTEST: gi|254321716|gb|GR825033.1|GR825033
genomic: ACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGgtaactgcta ... tttcatgcagGTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTT
EST: GAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCG GTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTTEST: gi|193512801|gb|FK468571.1|FK468571
genomic: GAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGgtaactgcta ... tttcatgcagGTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTT
EST: ACTGAAGAAAGGCACA-CCTGATGCATTCTAATGCTTCAGCTTTCAAGCG GTATACTACCAGGCAATTGCAAATATCAATACCTGCAGTGTTAATTAACTT
genomic: ACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGgtaactgcta ... tttcatgcagGTATACTACCAGGCAATTGCAAATATCAATGCCTGCAGTGTTAATTAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGATCTTTCTTTGAGAAGATCTTGTCCCGGAAGCTTTGAGAATAAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGgtaactgctaaaaacccttgttattcttattttaaatttttttgaagttgcttctagttcccattatctggtagaaatcagttggttgcttgtatttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT