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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtgggaattctattgaatctacagaccacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag

Basic information

species Glycine max
transcript GLYMA04G38800.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtgggaattctattgaatctacagaccacctaatgggcttttatag-ctatttgctttttgtggaaaat--tcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag
  | ||||| ||  ||||||| ||||| || |||||||||||  | ||||| ||||| || ||||| ||| | |||||||| ||||||||||| |||||||||            ||||  || || || ||||  | ||  ||   || | |  | | ||| | ||||  | |  | |||| ||| ||                                                  
AGTGGACAGAGATGTTCCTGGTGCAGTTCAATATGTCAAGAACACCATTTCTGATCTACTAATGAACCGTGTAGACTTATCTCTTCTAGTTATAACAAAGgtg------------aatccgcacactacttaatacgattgaatcctctgtgttgtctgtgttgtaaatctttaactgtttgttgtacag-------------------------------------------------

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 7
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtggg--aattctattgaatctacagaccacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag
| | ||| | ||  ||||||| |||||||| |||||||||||  | || || |||||  | ||||||||| ||||||| || ||||| ||||| |||||||||||  ||||| | ||  | ||      |  | ||    | ||  | || |||    | | ||  |    |||                                                                
GGTAGACCGTGATGTTCCTGGTGCAGTCCAATATGTCAAGAACACCATATCTGATCTATTAATGAATCGTGTGGACTTGTCTCTTCTTGTTATAACAAAGgtgggcaaattcaactgt-tttaagatgaattttatattgtgttgcaactcttttgactgtttgagatgcacag----------------------------------------------------------------

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtggga-attctattgaatctacagaccacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag---
 ||||| || ||  |||| |||||||   |  ||||||||||  | ||||| |||||||||||||| ||||| ||||| |||||| | || ||||| |||||   |  || || |  || ||  | ||   | |||   || ||| ||       | | | |  |  ||| |     |   |    ||||  | || |||    | ||   ||   || |  || || ||  | |     
TATTGATAGAGATGTTCCAGGGGCAGCTGAAAATGTCAAGAAAACCATTTCGGATCTTCTCATGAACCGTATTGACTTGTCACTTTTGGTGATTACTAAGgtaatatgttttacttgatttattgtcc-tgtgatg--tttgtatcgcctgaaagtgtattttaatgattaaagccatctgttaaaactaaaacaagaatcaaatggataatgctcctgatgtgtttcctcaaatcatag

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 23
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtgggaattctattgaatctacagaccacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag
 |||||  | || |||||||| || || ||||||||||| ||| |||| || || || ||||||||| | |||||||| || ||||| || || ||||||||| ||    | |  ||| |   |||||  ||   || || |          |||| | ||| |   ||  | |  ||| || |||||       | |||| |||  | ||  |  ||                  
CATTGATCGTGATATTCCTGGAGCTGTTCAGTATGTCAAAAATACAATCTCTGACCTGCTCATGAATAGAATGGACTTGTCTCTTCTTGTCATCACAAAGgtgagatacatctataatttc--gaccatatacacggtttgt----------gcttctcgtgtat--tttggctccttgctg-gcactttt----ctattcgttttcggttttctttat-----------------

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 22
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtgggaattctattgaatctacagac-cacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag
  ||||  | ||  | ||||| || ||  | ||||| |||      ||||| ||  | || ||||||||||||||  |||||||||| ||||| ||||||||   |  |  || | || |  |     |  | | ||  | ||  ||                                                                                          
TGTTGATCGAGATGTGCCTGGAGCTGTGGACTATGTTAAGGGCATGATTTCGGACTTGCTGATGAATCGTATGGATCTATCACTTCTTGTTATCACAAAGgtatcatgtgaatagtatttgtatctgtatatcacggcttgtttcag------------------------------------------------------------------------------------------

upper sequence: GLYMA04G38800.2 (Glycine max), 5'ss of exon 7
lower sequence: EFJ15224 (Selaginella moellendorffii), 5'ss of exon 22
GATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCAATTTCAGATCTTCTCATGAATCGTATGGACTTATCACTTCTAGTTATTACAAAGgtgggaattctattgaatctacagac-cacctaatgggcttttatagctatttgctttttgtggaaaattcagatatttgatgtgcactaccaaaacaattcctttgagcttggcactaacatgcttgctttagtag
  ||||  | ||  | ||||| || ||  | | ||| |||      ||||| ||  | || ||||||||||||||  |||||||||| ||||| ||||||||   |  |  || | |  |  |     |||| | ||  | ||  ||                                                                                          
TGTTGATCGAGATGTGCCTGGAGCTGTGGACTTTGTTAAGGGCATGATTTCGGACTTGCTGATGAATCGTATGGATCTATCACTTCTTGTTATCACAAAGgtatcatgtgaatagtacttgtatctgtacctcacggcttgtttcag------------------------------------------------------------------------------------------