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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATTTTACGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAAgtatgccaattatctccatatcttttttgtgcatttttgctgcttatgctgttatcttctcatccttacttcaccaaagaatgtgattattagttaaata...

Basic information

species Glycine max
transcript GLYMA04G37810.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37810.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 11
ACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATTTTACGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAAgtatgccaattatc-tccatatcttttttgtgcatttttgctgct--tatgctgttatcttctcatccttacttcaccaaagaatgtgattattagttaaata
 |||| || ||||||| ||||| |||||||||||| | |  || || ||||||||||| |||  ||| || ||||| |||||||| || |||||||| |||||||  ||| ||  ||| |    |||||     || |   || |  ||   ||| || || | | || | |||| ||  | | |    |  ||| |||    
CCAACCATACTGATAAGAAACAGTATGAACTTGACATTGATCGTATATTACGTGGGGAAGACTGCCGAACGACACTGATGATAAAGAACATTCCCAACAAgtatgtgaataattgtccttgctgtttttaccttttctgtttgttgctacaatgtgattttgttacccctccttc-cctgaaacttcactatttaattatg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407718|gb|EV277533.1|EV277533
EST:     GGACAACACTCATGATAAAAAATATTCCCAATAA                         GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATATCGAGGAAC
genomic: GGACAACACTCATGATAAAAAATATTCCCAATAAgtatgccaat ... tttttggcagGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAAC
EST: gi|11273713|gb|BF324089.1|BF324089
EST:     CGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAA                         GTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAAC
genomic: CGTGGGGATGACAACCGGACAACACTCATGATAAAAAATATTCCCAATAAgtatgccaat ... tttttggcagGTATACTTCAAAGATGCTTCTTGTTGCCATAGATGAGCAATGTCGAGGAAC