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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggttggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag

Basic information

species Glycine max
transcript GLYMA04G37120.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37120.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g29260.1 (Oryza sativa), 5'ss of exon 7
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggttggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag
|| || |||||||| || | ||| ||||||||  || |       || ||    ||||| | | | ||||||||||||||||| || ||||| ||||| ||||||||  || |      |  |  | |   |    ||| | ||         || |  |  ||    |||| | ||      |  |    | |   |  ||| |||| |                       
GATCTTGTTTCTGTGGACAGTCTCATTGAGGATTATTTTTACACGGAACCAGCTAATGAGTTTATTCAGAGTTGTGACATTGTTGCTTTCAACAAAATCTgtaagttccttggcaagtttggtgcttttagtttggatttccaaata----actgaaactaatggtttgattga-ata-----tgcaaaactctaattagtgtaataaaa-----------------------

upper sequence: GLYMA04G37120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G30230.2 (Arabidopsis thaliana), 5'ss of exon 6
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggt-tggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag
    | || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||  |  |         | ||| | || |  ||  |||| | || | || | || | | |   | |   || |  |  ||| | |  ||| ||| |  |  |  |                       
----TTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATGTAAgtttcatgaa---------cctattcgtaattctttttaagctgtgatcttttgttagataatgtggtgtgtaactgt-ctatgttggattgaatcataatgcaggag----------------------

upper sequence: GLYMA04G37120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT1G30230.1 (Arabidopsis thaliana), 5'ss of exon 6
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggt-tggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag
||||| || ||| |||| ||  | || || || || ||||| ||||| || |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||  |  |         | ||| | || |  ||  |||| | || | || | || | | |   | |   || |  |  ||| | |  ||| ||| |  |  |                          
GACCTTGTCTCTATTGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGCTGTGACATTGTTGCCTTCAACAAGATATgtaagtttcatgaa---------cctattcgtaattctttttaagctgtgatcttttgttagataatgtggtgtgtaactgt-ctatgttggattgaatcataatgcag-------------------------

upper sequence: GLYMA04G37120.2 (Glycine max), 5'ss of exon 7
lower sequence: AT2G18110.1 (Arabidopsis thaliana), 5'ss of exon 5
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggttggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag
||||| || ||| | || ||  | || || || || ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| || |||||||||||         ||||||||| | |       | | || || |||   || |||  | | |   | |   || | |   | |  | | ||| ||    | ||||  |                      
GACCTTGTATCTATCGACACCATGATCGAAGAGCAACTCACTGTTGAACCGATCAATGAATATGTCCAGAGTTGTGACATTGTTGCCTTCAACAAGATATgtaagttacacga---accttttctcaactacttagaatgctgagattg---ttttatacgataatttggtgtgtaac-taactgttggatattgaattgaatcataatgcag--------------------

upper sequence: GLYMA04G37120.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 5'ss of exon 7
GACCTAGTTTCTGTTGATACTCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttttagatgaccttttcttatccctagtaattcctaaggttggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacag
||| | |||||||| ||    ||||||||||||||  | || ||||| ||||  ||||| ||||||||||| ||||||||||| |||||||| || |||||||||||  ||   | |  || | |  |   |||  || |          || |||  |   |   | | ||| |                                                          
GACTTGGTTTCTGTGGACGACCTTATTGAGGAACAGTTGACTGTTGAACCCACGAATGAGTATGTCCAGAGCTGTGACATTGTAGCCTTCAACAAGATATgtaagttcattt--tcatgttgtgtggt--atagggatccaaccatcctttgctgtgctctgttctatgtttcttgag-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017474|gb|CX704216.1|CX704216
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTCCAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|19346370|gb|BM891250.1|BM891250
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCTTTTAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208316901|gb|GE112756.1|GE112756
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31307073|gb|CD392276.1|CD392276
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31462978|gb|CD405006.1|CD405006
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACCATCGGTGGGATTTGGAGATCATGGCCACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|8401588|gb|BE057152.1|BE057152
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|193348781|gb|FK316905.1|FK316905
EST:     ATTCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: A-TCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|192329979|gb|FK021565.1|FK021565
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|213590824|gb|DB975637.1|DB975637
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|22523638|gb|BU082449.1|BU082449
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|8285165|gb|BE022724.1|BE022724
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|58015143|gb|CX701885.1|CX701885
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254318263|gb|GR832431.1|GR832431
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|10846111|gb|BF069088.1|BF069088
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254314708|gb|GR829701.1|GR829701
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|13480760|gb|BG510103.1|BG510103
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|193404940|gb|FK373367.1|FK373367
EST:     CCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|20814441|gb|BQ298919.1|BQ298919
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254314709|gb|GR829702.1|GR829702
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31312571|gb|CD397774.1|CD397774
EST:     CATCAATGAATATGTCCAGATTTGTGACATTGTGGCCTTCAATAAAATAT                         TAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208091924|gb|GD890515.1|GD890515
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|6964003|gb|AW432696.1|AW432696
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATGTGGAGATCATGGCAACTGCGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|6848971|gb|AW351261.1|AW351261
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|15813987|gb|BI786262.1|BI786262
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|192295190|gb|FG986909.1|FG986909
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAA--TAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCA-CTGGGAGAATTGCA-G
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|26058029|gb|CA800943.1|CA800943
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|42722502|gb|CK768401.1|CK768401
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|151396946|gb|EV266819.1|EV266819
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|151409150|gb|EV278958.1|EV278958
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCG
EST: gi|193410792|gb|FK376359.1|FK376359
EST:     CAATGAATATTGTTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CAATGAATA-TG-TCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31463360|gb|CD405388.1|CD405388
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208077947|gb|GD874065.1|GD874065
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|11687926|gb|BF595602.1|BF595602
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTG
EST: gi|7692495|gb|AW760600.1|AW760600
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG