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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag

Basic information

species Glycine max
transcript GLYMA04G37050.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatg---ttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag
|||| |||||||| || ||||  || || || || || ||||  ||||| ||||||||||| ||||| ||||||||||||||| ||||| | || || ||||||   | ||    ||    ||   ||    |  |      ||||| ||| |||       |       |  |    |   ||  ||                                                       
ATGGATTACGCACTAAAGATAAAGAACGTGTACTGGTTCTTGGTGCCACAAATAGGCCTTTCGACCTGGATGAGGCTGTCATTAGGAGGTTCCCGCGCAGgtgacagctataaccttgtgttggggttgggataatgaaaaattgctgtttgttgatttctaaccatttggtcgttaattactactgtag-----------------------------------------------------

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g22420.1 (Oryza sativa), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgtt---caactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagg-gtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag
||||  || | ||||| ||||  ||||| ||  | || ||||| || ||||||||||| |||||||| |||||||||||  || ||||||| ||| || |||||    ||| ||   ||     | |   |||    || |  ||||  ||||  |      ||     ||    |  |  | | | || ||  |  |  || |   |                                    
ATGGTCTAAGAACAAAAGATAAAGAGCGTGTATTAGTACTTGCTGCAACTAATAGGCCATTTGACCTTGATGAGGCTGTTGTTAGGAGGCTTCCTAGGCGgtgagtatcatatttttcattcattttaagatttgaactgtggtgctaattttatgatttttagataattgacttgactatgcatgtgttttggtatatgtattgcttag----------------------------------

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGG-CTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag
| || |||||| ||  |||| |  || || ||||| || ||||||||||| ||| ||||||||||||| ||||||||||| ||| |  || |||| || |||| || |  |  |    ||   |||  | |     ||||||| |   ||      |  |     ||| |||    |   |  ||| || |       |                                          
ACGGTCTTACG-ACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCGTAGgtaaattataaatc--gct-tccttggactaagctttttttgttaaattgacatgacagttataggttgtgaaaattt-tgtggtattgacttctgcag-----------------------------------------

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag
| ||  |  | ||||| || |  || || ||||| || ||||||||||| ||||| ||||||||||| || |||||||||||| | ||| ||||||  |||| |  |  || |  | || |  |      |     ||| ||     ||        | |    | |  |||   ||| |   |                                                        
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaa--tttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtttttggtattggcttctgcag-----------------------------------------------------

upper sequence: GLYMA04G37050.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 24
ATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactccatgttcaactgctcttcaattccttcttttttgctcttttttgggaagggaggggggtggtgggggtgggtagggtgttaatggaactaataaatgttcgaagttttcttaatcttattggtcttctgcag
||||||| |||||||| ||||| ||  | ||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||| | ||| |||| || |||| |   |     | | |   | |      |  || |  ||    ||         ||||    | |  |  |    |||      || |  |                                               
ATGGCTTGCGCACAAAAGATACCGAAAGGGTTCTGGTGCTTGCAGCCACAAATAGACCTTTTGACCTTGATGAGGCTGTTATTAGAAGGTTGCCGCGTAGgtaagg-catcactgagccattttgttggactatcctactt-tatttccacaaactgggacttagttcttctgtaatggttcatcttttacag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258265|gb|BE346412.1|BE346412
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGT
EST: gi|10845533|gb|BF071131.1|BF071131
EST:     AATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAG                         ATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGT
genomic: AATAGGCCTTTTGACCTAGATGAGGCTGTCATTCGGAGGCTGCCTCGGAGgtgaactcca ... tcttctgcagATTAATGGTAAATTTGCCCGATGCTCCAAATAGAGCAAAAATATTAAAAGT