Sequence
atgc intronic sequence ATGC exonic sequenceTATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgtttgaattttatgctaattacttgttgtttacttgtttctagttttccattatgaagattcttagtatatttgtgcaaagtttgaaatttcagtgaaaa...
Basic information
species | Glycine max |
transcript | GLYMA04G34440.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G18890.1 (Arabidopsis thaliana), 5'ss of exon 6
TATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgttt----gaattttatgctaattacttgttgtttacttgtttctag---ttttccattatgaagat-tcttagtatatttgtg---caaagtttgaaatttcagtgaaaa------
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CATTGAACTTGATGAGCTACGGGAAGCTTTAGCGGATGAGTTAGGCGAGCCAGACGCCAGTGTTCTAAGCGACATCATGCGTGAAGTTGACACTGACAAGgttctttcaaatatccaaaaaaatcctcctttaaggcctaacaataaagcttgtcaagagaaaagatatatccctctgcttctgagtcggattgttgggcttgtttgctttttacag
upper sequence: GLYMA04G34440.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g05520.t01 (Vitis vinifera), 5'ss of exon 6
TATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgtttgaattttatg-ctaattacttgttgtttacttg--tttctagtttt-----ccattatgaagattct-tagtatatttgtgcaaagtttga-aatttcagtgaaaa-----------
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TATTGACTTAATCGAGCTACAAGAAGCCCTAGCAGATGAATCCGGTGAGACGGATGCTGATGTAGTGAATGAGATCATGCGGGAGGTCGACACAGACAAGgtttgactctcaaggcttgccagctgctggcatcatgactttcaagccttgccagctctttcaaagatattgtatcatccctgtacctttcttgatgatttgcatagtttttttgtcacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192319980|gb|FK013000.1|FK013000EST: CTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAG GATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACT
genomic: CTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgtttgaattt ... cacttcacagGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgtttgaattttatgctaattacttgttgtttacttgtttctagttttccattatgaagattcttagtatatttgtgcaaagtttgaaatttcagtgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT